Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq549470 567 2e-159 seq396660 484 2e-134 seq785440 282 1e-73 seq359541 179 1e-42 seq154466 161 3e-37 seq364180 109 2e-21 seq555236 95.1 4e-17 >seq549470 Length=5376 Score = 567 bits (628), Expect = 2e-159 Identities = 439/513 (86%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | | |||||| |||| |||||||||||||||||| Sbjct 1440 GTACTCATTCCAATTACCAGACTCGTA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 1498 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| || || ||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1499 CCCTGTATCAGGATTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCATT 1558 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||| Sbjct 1559 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTA 1618 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||| |||||||||||||| | |||| ||| Sbjct 1619 GGCCGCTATCCTACCATCGAAAGTTGATAGGGTAGAAATTTGAATGATGCGTCGCTGGCA 1678 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAGGGC--- 294 | | |||| |||||| ||| ||||||| |||||||| | ||| | | || || Sbjct 1679 CGAGGGCCGTGCGATCCGTCAAGTTATCATGAATCA--TTGTAGCAACGGGCAGAGCCCG 1736 Query 295 -GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 || | |||||||||||||||||| ||||||| ||||||||||||| | ||||| ||| Sbjct 1737 TGTCGACCTTTTATCTAATAAATACATCCCTTCCAGAAGTCGGGGTTTGTTGCATGAATT 1796 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| |||||| |||||| |||| |||||||| Sbjct 1797 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGGTACCATCAAACAAACTATAACTGA 1855 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 |||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 1856 TTTAATGAGCCATTCGCAGTTTCATAGTCTGAATTAGTTCATACTTACACATGCATGGCT 1915 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 1916 TAATCTTTGAGACAAGCATATGACTACTGGCAG 1948 >seq396660 Length=446 Score = 484 bits (536), Expect = 2e-134 Identities = 367/425 (86%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 60 Query 149 CTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 208 ||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 61 CTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 120 Query 209 AGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATT 267 ||||||||||||||||||| | |||||||| | | |||| |||||| ||| |||||| Sbjct 121 AGGGCAGAAATTTGAATGATGCGTCGCCGGCACGATGGCCGTGCGATCCGTCGAGTTATC 180 Query 268 ATGAATCACCAAGGAGC--CCCGAAG----GGCGTTGGTTTTTTATCTAATAAATACACC 321 |||||||| | | ||| | | || |||| | ||||||||||||||| || | Sbjct 181 ATGAATCATC--GCAGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCATC 238 Query 322 CCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG 380 |||||| ||||||||||||| | ||| ||||||||||||||||||| |||||||||| | Sbjct 239 CCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAG 298 Query 381 TAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT 440 ||| || ||| |||||| |||| ||||||||||||||||||||||||||||||||| || Sbjct 299 TAG-CAGATACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGT 357 Query 441 ATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 | ||| | | ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 358 CTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 417 Query 500 GGCAG 504 ||||| Sbjct 418 GGCAG 422 >seq785440 Length=836 Score = 282 bits (312), Expect = 1e-73 Identities = 373/509 (73%), Gaps = 15/509 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||||||| || | ||| | |||| | |||| |||||||||||||||||| Sbjct 811 GTGCTCATTCCAATAACCA-ACCTCATAGAGTCTGGTATTGTTATTTATTGTCACTACCT 753 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | | ||||||||||||| || | | ||||||| ||| ||||||| || ||| Sbjct 752 CCCCATATTATGATTGGGTAATTTATGCACTTACTGCCTTTCTTAGATGTGGCAGTCGTG 693 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||| |||||| || || | |||| || | ||||| || | |||||| | ||| | Sbjct 692 TCTTAGGCTCTCTTTCTGAAATCAAATCTTAATTATCCATCACCCGTCACCAACATAATG 633 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||| |||||| ||||||||||| ||| |||||||||||| |||| | || Sbjct 632 GGCCACTATCGTACCATTAAAAGTTGATAGCGCAAAAATTTGAATGATGCATCAGCAGCA 573 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAAT-CACCAAGGAGCCCCGAAGGGC----G 295 | || || || | ||||| |||| | | ||| |||| || || | Sbjct 572 GGAAGCTGTGTGACCTATCGAGTTACCATGATTGCGACAACGAGC-----AGAGCCCATG 518 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGG-GTTTTTAGCATGTATTA 353 | | ||||||||||||||| | ||||||| |||| ||| |||| | || ||||| Sbjct 517 TCGACCTTTTATCTAATAAATGTATCCCTTCCTAAAGTTGGGTGTTTGTTGCTCATATTA 458 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413 ||| || |||||| |||||||| | |||| || |||| ||||| |||| |||||| || Sbjct 457 GCTTTAAAATTACTACGGTTATTCGAGTAGCAA-GTACCATCAATCAAACTATAACTAAT 399 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTT 472 | |||||| ||||| |||| | || | | ||| | | |||| || |||||||| |||| Sbjct 398 TAAATGAGTCATTCACAGTCTTACAATCTGAATTAGTTCATACCTATACATGCATAGCTT 339 Query 473 AATCTTTGAGACAAGCATATGACTACTGG 501 || ||||||||||||||||||||| ||| Sbjct 338 AAATTTTGAGACAAGCATATGACTATTGG 310 >seq359541 Length=1563 Score = 179 bits (198), Expect = 1e-42 Identities = 147/175 (84%), Gaps = 9/175 (5%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||||||||||| Sbjct 323 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTATTGCACGTATTAGCTCTAG 264 Query 361 AATTACCACGGTTATCCATGTA-----GTA--AGGTACTATCAAATAAACGATAACTGAT 413 |||||| |||||||||| ||| ||| |||||| ||||||||||| ||||||||| Sbjct 263 AATTACTACGGTTATCCGAGTACTCGAGTAGCAGGTACCATCAAATAAACTATAACTGAT 204 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCAT 467 |||||||| ||||||||||||||| ||| ||| | | ||||||| ||||| || Sbjct 203 TTAATGAGTCATTCGCAGTTTCACAGTAAGAATTAGTTCATACTTACACATGGAT 149 >seq154466 Length=534 Score = 161 bits (178), Expect = 3e-37 Identities = 236/329 (72%), Gaps = 21/329 (6%) Strand=Plus/Plus Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||| ||||||||||| |||||||||||||||| |||| || | Sbjct 10 GGCCACTATCCTACCATTAAAAGTTGATAGAGCAGAAATTTGAATGATGCATCACCAGTA 69 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAAT-CACCAAGGAGCCCCGAAGGGC----G 295 | || || || ||| ||||| |||| | | ||| |||| || || | Sbjct 70 GGAAGCTGTGTGACCTGTTGAGTTACCATGATTGCGACAACGAGC-----AGAGCCCATG 124 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCCGAA--GTCGGGGTTTTTAGCATGTATTA 353 | | ||||||||||||||| | ||||||| || | ||||||| | ||| |||||| Sbjct 125 TCGACCTTTTATCTAATAAATGTATCCCTTCCAAAAGTTGGGGGTTTGTTGCACGTATTA 184 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413 | | || |||||| | |||||| | |||| || |||| ||||| ||| |||||| || Sbjct 185 GTTTTAAAATTACTATGGTTATTCGAGTAGCAA-GTACCATCAATCAAATTATAACTAAT 243 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTT 472 | ||||| ||||| |||| | || | | ||| | | |||| || |||||||| || Sbjct 244 TAAATGATTCATTCACAGTCTTACAATCTGAATTAGTTCATACCTATACATGCATAGC-- 301 Query 473 AATCTTTGAGACAAGCATATGACTACTGG 501 |||||| ||||||||||||| ||| Sbjct 302 -----TTGAGAAAAGCATATGACTATTGG 325 >seq364180 Length=1257 Score = 109 bits (120), Expect = 2e-21 Identities = 88/105 (84%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 153 TTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGG 212 ||| |||| ||| || ||||| ||| ||||||||||||||||| ||| || |||||| Sbjct 351 TTCTCCGTCACCTATTACCACCATAGTAAGCCACTATCCTACCATCAAAAATTAATAGGG 292 Query 213 CAGAAATTTGAATGAACCATCGCCGGCTCAA-GGCCATGCGATTC 256 || |||||||||||| |||||||||||||| |||||||| |||| Sbjct 291 CAAAAATTTGAATGATGCATCGCCGGCTCAAGGGCCATGCAATTC 247 >seq555236 Length=6852 Score = 95.1 bits (104), Expect = 4e-17 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6314 TTATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 6368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1498403074048