Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20]
794,288 sequences; 740,035,655 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq549470 567 2e-159
seq396660 484 2e-134
seq785440 282 1e-73
seq359541 179 1e-42
seq154466 161 3e-37
seq364180 109 2e-21
seq555236 95.1 4e-17
>seq549470
Length=5376
Score = 567 bits (628), Expect = 2e-159
Identities = 439/513 (86%), Gaps = 13/513 (3%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| | | |||||| |||| ||||||||||||||||||
Sbjct 1440 GTACTCATTCCAATTACCAGACTCGTA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 1498
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||| || || ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1499 CCCTGTATCAGGATTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCATT 1558
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |||
Sbjct 1559 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTA 1618
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| ||||||||||||||||||||||||||| |||||||||||||| | |||| |||
Sbjct 1619 GGCCGCTATCCTACCATCGAAAGTTGATAGGGTAGAAATTTGAATGATGCGTCGCTGGCA 1678
Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAGGGC--- 294
| | |||| |||||| ||| ||||||| |||||||| | ||| | | || ||
Sbjct 1679 CGAGGGCCGTGCGATCCGTCAAGTTATCATGAATCA--TTGTAGCAACGGGCAGAGCCCG 1736
Query 295 -GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352
|| | |||||||||||||||||| ||||||| ||||||||||||| | ||||| |||
Sbjct 1737 TGTCGACCTTTTATCTAATAAATACATCCCTTCCAGAAGTCGGGGTTTGTTGCATGAATT 1796
Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412
|||||||||||||| |||||||||| ||||| |||||| |||||| |||| ||||||||
Sbjct 1797 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGGTACCATCAAACAAACTATAACTGA 1855
Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471
|||||||||||||||||||||||| || | ||| | | ||||||| ||||||||||||
Sbjct 1856 TTTAATGAGCCATTCGCAGTTTCATAGTCTGAATTAGTTCATACTTACACATGCATGGCT 1915
Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||
Sbjct 1916 TAATCTTTGAGACAAGCATATGACTACTGGCAG 1948
>seq396660
Length=446
Score = 484 bits (536), Expect = 2e-134
Identities = 367/425 (86%), Gaps = 12/425 (3%)
Strand=Plus/Plus
Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 60
Query 149 CTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 208
||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 120
Query 209 AGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATT 267
||||||||||||||||||| | |||||||| | | |||| |||||| ||| ||||||
Sbjct 121 AGGGCAGAAATTTGAATGATGCGTCGCCGGCACGATGGCCGTGCGATCCGTCGAGTTATC 180
Query 268 ATGAATCACCAAGGAGC--CCCGAAG----GGCGTTGGTTTTTTATCTAATAAATACACC 321
|||||||| | | ||| | | || |||| | ||||||||||||||| || |
Sbjct 181 ATGAATCATC--GCAGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCATC 238
Query 322 CCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG 380
|||||| ||||||||||||| | ||| ||||||||||||||||||| |||||||||| |
Sbjct 239 CCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAG 298
Query 381 TAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT 440
||| || ||| |||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 299 TAG-CAGATACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGT 357
Query 441 ATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499
| ||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 417
Query 500 GGCAG 504
|||||
Sbjct 418 GGCAG 422
>seq785440
Length=836
Score = 282 bits (312), Expect = 1e-73
Identities = 373/509 (73%), Gaps = 15/509 (3%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|| ||||||||||| || | ||| | |||| | |||| ||||||||||||||||||
Sbjct 811 GTGCTCATTCCAATAACCA-ACCTCATAGAGTCTGGTATTGTTATTTATTGTCACTACCT 753
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||| | | ||||||||||||| || | | ||||||| ||| ||||||| || |||
Sbjct 752 CCCCATATTATGATTGGGTAATTTATGCACTTACTGCCTTTCTTAGATGTGGCAGTCGTG 693
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||| |||||| || || | |||| || | ||||| || | |||||| | ||| |
Sbjct 692 TCTTAGGCTCTCTTTCTGAAATCAAATCTTAATTATCCATCACCCGTCACCAACATAATG 633
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||||||||| |||||| ||||||||||| ||| |||||||||||| |||| | ||
Sbjct 632 GGCCACTATCGTACCATTAAAAGTTGATAGCGCAAAAATTTGAATGATGCATCAGCAGCA 573
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAAT-CACCAAGGAGCCCCGAAGGGC----G 295
| || || || | ||||| |||| | | ||| |||| || || |
Sbjct 572 GGAAGCTGTGTGACCTATCGAGTTACCATGATTGCGACAACGAGC-----AGAGCCCATG 518
Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGG-GTTTTTAGCATGTATTA 353
| | ||||||||||||||| | ||||||| |||| ||| |||| | || |||||
Sbjct 517 TCGACCTTTTATCTAATAAATGTATCCCTTCCTAAAGTTGGGTGTTTGTTGCTCATATTA 458
Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413
||| || |||||| |||||||| | |||| || |||| ||||| |||| |||||| ||
Sbjct 457 GCTTTAAAATTACTACGGTTATTCGAGTAGCAA-GTACCATCAATCAAACTATAACTAAT 399
Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTT 472
| |||||| ||||| |||| | || | | ||| | | |||| || |||||||| ||||
Sbjct 398 TAAATGAGTCATTCACAGTCTTACAATCTGAATTAGTTCATACCTATACATGCATAGCTT 339
Query 473 AATCTTTGAGACAAGCATATGACTACTGG 501
|| ||||||||||||||||||||| |||
Sbjct 338 AAATTTTGAGACAAGCATATGACTATTGG 310
>seq359541
Length=1563
Score = 179 bits (198), Expect = 1e-42
Identities = 147/175 (84%), Gaps = 9/175 (5%)
Strand=Plus/Minus
Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||| || ||||||| ||||||||||||| | ||| |||||||||||||
Sbjct 323 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTATTGCACGTATTAGCTCTAG 264
Query 361 AATTACCACGGTTATCCATGTA-----GTA--AGGTACTATCAAATAAACGATAACTGAT 413
|||||| |||||||||| ||| ||| |||||| ||||||||||| |||||||||
Sbjct 263 AATTACTACGGTTATCCGAGTACTCGAGTAGCAGGTACCATCAAATAAACTATAACTGAT 204
Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCAT 467
|||||||| ||||||||||||||| ||| ||| | | ||||||| ||||| ||
Sbjct 203 TTAATGAGTCATTCGCAGTTTCACAGTAAGAATTAGTTCATACTTACACATGGAT 149
>seq154466
Length=534
Score = 161 bits (178), Expect = 3e-37
Identities = 236/329 (72%), Gaps = 21/329 (6%)
Strand=Plus/Plus
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||||||||||||||| ||||||||||| |||||||||||||||| |||| || |
Sbjct 10 GGCCACTATCCTACCATTAAAAGTTGATAGAGCAGAAATTTGAATGATGCATCACCAGTA 69
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAAT-CACCAAGGAGCCCCGAAGGGC----G 295
| || || || ||| ||||| |||| | | ||| |||| || || |
Sbjct 70 GGAAGCTGTGTGACCTGTTGAGTTACCATGATTGCGACAACGAGC-----AGAGCCCATG 124
Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCCGAA--GTCGGGGTTTTTAGCATGTATTA 353
| | ||||||||||||||| | ||||||| || | ||||||| | ||| ||||||
Sbjct 125 TCGACCTTTTATCTAATAAATGTATCCCTTCCAAAAGTTGGGGGTTTGTTGCACGTATTA 184
Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413
| | || |||||| | |||||| | |||| || |||| ||||| ||| |||||| ||
Sbjct 185 GTTTTAAAATTACTATGGTTATTCGAGTAGCAA-GTACCATCAATCAAATTATAACTAAT 243
Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTT 472
| ||||| ||||| |||| | || | | ||| | | |||| || |||||||| ||
Sbjct 244 TAAATGATTCATTCACAGTCTTACAATCTGAATTAGTTCATACCTATACATGCATAGC-- 301
Query 473 AATCTTTGAGACAAGCATATGACTACTGG 501
|||||| ||||||||||||| |||
Sbjct 302 -----TTGAGAAAAGCATATGACTATTGG 325
>seq364180
Length=1257
Score = 109 bits (120), Expect = 2e-21
Identities = 88/105 (84%), Gaps = 1/105 (1%)
Strand=Plus/Minus
Query 153 TTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGG 212
||| |||| ||| || ||||| ||| ||||||||||||||||| ||| || ||||||
Sbjct 351 TTCTCCGTCACCTATTACCACCATAGTAAGCCACTATCCTACCATCAAAAATTAATAGGG 292
Query 213 CAGAAATTTGAATGAACCATCGCCGGCTCAA-GGCCATGCGATTC 256
|| |||||||||||| |||||||||||||| |||||||| ||||
Sbjct 291 CAAAAATTTGAATGATGCATCGCCGGCTCAAGGGCCATGCAATTC 247
>seq555236
Length=6852
Score = 95.1 bits (104), Expect = 4e-17
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6314 TTATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 6368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1498403074048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |