Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq677466 194 1e-44 seq794097 158 1e-33 seq611863 145 6e-30 >seq677466 Length=8805 Score = 194 bits (214), Expect = 1e-44 Identities = 571/871 (66%), Gaps = 12/871 (1%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| | || ||| |||||||| || || || || ||||||| Sbjct 8183 TGTTCCCTATCCAGTACCCTCAAATCTGGGAGATGTACAAGAAAGCCGAGGCCTCCTTCT 8124 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | |||||||||||||||||| | || || ||||||| | | || Sbjct 8123 GGACCGCCGAGGAGGTCGATTTGTCCCAGGATATTCGCCACTGGGACTCCCTCACTCCCG 8064 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 || | || ||||| || || || | || ||||| ||||| || || || ||||| Sbjct 8063 ACGAGCGCCACTTCATCAAGCACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTTC 8004 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||| | | |||||| | ||||||| || || || ||||| || |||| Sbjct 8003 TCGAGAATCTCGCCGGCCGTTTCATGAAGGAGGTCCAGGTCTCTGAGGCCCGCGCCTTCT 7944 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 |||||||||| || ||||| |||||| ||||||| |||||||||||| | ||| |||| Sbjct 7943 ACGGCTTCCAAATCGCCATCGAGAATATCCACTCCGAGATGTACAGTCTCCTCCTCGAAT 7884 Query 61364 CGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 | ||||||| ||| | | | || | | | || ||| || || || || | || Sbjct 7883 CCTACATCAAGGATTCCGAAGAAAAGAGCTCCCTTTTTC-GCGCAATTGATACTGTCCCT 7825 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTT 61482 || | || || || |||||||| || |||||| | | | | | ||| Sbjct 7824 TGCGTCCAACGCAAGGCCAATTGGGCCCTCCGTTGGAT---CGATGGCTCTGAATCCTTT 7768 Query 61483 GGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCC 61542 | ||| || | | || ||||| || ||||| | |||||| |||| || | Sbjct 7767 GCTGAGCGGATAATCGCCTTTGCTTGTGTGGAGGGGATTTTTTTCTCTGGAAGCTTCTGC 7708 Query 61543 GCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTG 61602 || || || ||| ||||||| |||||| | ||||| || |||| || || || ||| Sbjct 7707 GCGATTTTCTGGCTGAAGAAGCGTGGATTGATGCCTGGATTGACTTTTTCAAACGAATTG 7648 Query 61603 ATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTG 61662 || || | || |||||| | || ||||| ||||| |||| | || || ||| Sbjct 7647 ATTTCCAGGGATGAGGGCCTCCACTGTGACTTTGCGTGCCTGCTTTACA---GCCTGCTG 7591 Query 61663 GTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAA 61722 || | | |||||| ||| | || || || || || ||||| Sbjct 7590 AAGATGAAGCTGAGCGAGGAGAAAGTGAAGGGCATAGTGGCGGATGCTGTTGAGATCGAG 7531 Query 61723 CAGGAATTTCTGACTGACGCTTTGCCCGTCT-CACTCATCGGCATGAATTGTGGACTAAT 61781 ||||||| || || || || |||| | | | | || |||||| ||| | | || Sbjct 7530 AGGGAATTTGTGTGCGATGCGCTG-CCGTGTGCGTTGGTGGGGATGAATGGTGAATTGAT 7472 Query 61782 GTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG-GTCGATTTGGGTATGAAGCGGA 61840 | ||||| ||||||||||| || || || || || | || ||||||| | || Sbjct 7471 GAGCCAGTACATTGAATTTGTGGCGGATCGATTGCTGAATGCGTTGGGGTATG-GGAAGA 7413 Query 61841 TCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGA 61900 | || ||| | | ||||||||||||| ||||| |||| ||| | || ||||||| Sbjct 7412 TGTACAATGTGCAGAACCCATTTGATTGGATGGAGTTGATCAGCCTGCAGGGGAAGACGA 7353 Query 61901 ATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||| || |||||||| || || || ||||| Sbjct 7352 ATTTCTTTGAGAAACGGGTGGGGGAGTATCA 7322 >seq794097 Length=14469 Score = 158 bits (174), Expect = 1e-33 Identities = 553/851 (65%), Gaps = 18/851 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| |||||||| ||||| | || ||||||||||| | || || ||||||||| Sbjct 12541 ATTTGGGAAATGTACAAGAAGGCCCAGGCCTCCTTCTGGACTGCCGACGAAGTCGATTTG 12482 Query 61147 TCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205 || | ||| | ||||||| | | || | || | |||||||| || || Sbjct 12481 GCCCAGGACCTCTCCCACTGGGACTCCCTCCTCCC-CTCCGAGAAGCATTTCATCAAGCA 12423 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 || | || ||||| |||||||| ||||| |||||| |||||| | | || || Sbjct 12422 CGTCCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCCTCGAGAATCTTGCCGCCCGCTT 12363 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | | | ||||| || || || ||||| || ||||||||||||||||||||||| || Sbjct 12362 CATGAACGAGGTCCAGGTCTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATTGCCATCGA 12303 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG- 61383 ||| ||||||| ||||||||||| || | ||||| || || |||| ||| | | || Sbjct 12302 GAACATCCACTCCGAGATGTACAGCCTTTTGATCGAGACCTATATCAAGGATTCTGCCGA 12243 Query 61384 GAACGTGAACGAT--TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| | | || | ||| |||||| | || || || || || || || Sbjct 12242 GAAGG----CCATGCTCTTCCGCGCCATCCACACCATTCCCTGCGTCCAGAACAAGGCCA 12187 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501 |||||||| | ||||| ||| || | | || || || |||| || | Sbjct 12186 ATTGGGCCCTGCGCTGGAT--TCAGGGTTCCGAAT-CCTTCACCGAGCGTCTGCTCGCCT 12130 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || || ||||| |||| ||| ||| || |||||| || ||| | |||| Sbjct 12129 TCGCCTGCGTGGAGGGGATATTCTTCTCCGGAAGCTTCTGCGCAATATTCTGGCTTAAGA 12070 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | || || | |||||||| |||| ||| ||| || |||||||| || || ||||| Sbjct 12069 AGCGCGGGTTGATGCCCGGGTTGACGTTCTCCAACGAATTGATATCGCGGGATGAGGGTT 12010 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGG 61681 |||| || || || || |||| | || || ||| ||| | | |||| Sbjct 12009 TGCACTGCGACTTCGCGTGCCTGCTGTACA---GCCTGCTGAAGAAGAAGCTGAGCGAGG 11953 Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741 || | ||| | ||| || || || || ||| ||| |||||| || || | Sbjct 11952 AGAGAGTGAAGGGGATGGTGGCGGATGCCGTGGATATAGAAAGGGAATTCGTGTGCGAGG 11893 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 | |||| | || | | || ||||| | | | | ||| ||||||||| ||||| | Sbjct 11892 CGCTGCCGTGCGCATTGGTGGGGATGAACGGAGAATTGATGAGGCAGTATATAGAATTCG 11833 Query 61802 TTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCA 61860 | || || | | ||| | || ||||| | | ||| || ||| | | ||||| Sbjct 11832 TGGCGGATAGATTACTGGGGGCGTTGGGGTACG-GGAAGATGTACAATGTGCAGAACCCG 11774 Query 61861 TTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTA 61920 ||||||| ||||| ||||| ||| | || ||||| ||||| || |||||| | || Sbjct 11773 TTTGATTGGATGGAGTTGATTAGCCTGCAGGGGAAGACCAATTTCTTTGAGAAAAGAGTG 11714 Query 61921 GGCGACTATCA 61931 || || || || Sbjct 11713 GGGGATTACCA 11703 >seq611863 Length=950 Score = 145 bits (160), Expect = 6e-30 Identities = 220/313 (70%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| |||| ||| | || ||| |||||||| || || || || | ||||| Sbjct 623 TGTTCCCTATCGGGTACCCTCAAATCTGGGAGATGTACAAGAAAGCCGAGGCCTTCTTCT 682 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | |||||||||||||||||| | || || ||||||| | | || Sbjct 683 GGACCGCCGAGGAGGTCGATTTGTCCCAGGATATTCGCCACTGGGACTCCCTCACTCCCG 742 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 || | || ||||| || || || | || ||||| ||||| || || || ||||| Sbjct 743 ACGAGCGCCACTTCATCAAGCACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTTC 802 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||| | |||||| | ||||||| || || || ||||| || |||| Sbjct 803 TCGAGAATCTCGCCTGCCGTTTCATGAAGGAGGTCCAGGTCTCTGAGGCCCGCGCCTTCT 862 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 |||||||||| || ||||| |||||| ||||||| |||||||||||| | ||| |||| Sbjct 863 ACGGCTTCCAAATCGCCATCGAGAATATCCACTCCGAGATGTACAGTCTCCTCCTCGAAT 922 Query 61364 CGTACATCAGGGA 61376 | ||||||| ||| Sbjct 923 CCTACATCAAGGA 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393719388696320