Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq3 197 4e-48 seq7 98.7 3e-18 seq6 91.5 4e-16 seq8 82.4 2e-13 seq5 82.4 2e-13 >seq3 Length=15215380 Score = 197 bits (218), Expect = 4e-48 Identities = 186/236 (79%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 10553816 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 10553757 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 10553756 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 10553697 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 10553696 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 10553638 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 10553637 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 10553582 Score = 181 bits (200), Expect = 3e-43 Identities = 182/234 (78%), Gaps = 17/234 (7%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 10554352 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 10554293 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| |||||||||||| ||||||| | ||| | Sbjct 10554292 GTGGTTTAATTCGATACAACGCGCAGAACCTTACCAGCCCTTGACA---TATGAAC---- 10554240 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 |||| | | ||| ||| || || || | ||||||| ||||||| || Sbjct 10554239 --GAGA-AACCCTATCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 10554183 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| |||||||||| |||||||| |||||| Sbjct 10554182 TCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGTCCTATAACGAGCGAAACCCT 10554129 >seq7 Length=17055980 Score = 98.7 bits (108), Expect = 3e-18 Identities = 79/94 (84%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 14 TTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG 73 || |||||||| | |||| |||| | ||||| ||| | ||||||||||||||||||||| Sbjct 2199933 TTAAAACTCAATGTAATTAACGGAG-CCCGCGTAAGAGATGGAGCATGTGGTTTAATTCG 2199991 Query 74 AAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 | ||||||| |||||| ||||||| |||||||| Sbjct 2199992 ATGCAACGCAAAGAACTTTACCAAGACTTGACAT 2200025 >seq6 Length=18523719 Score = 91.5 bits (100), Expect = 4e-16 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 404 GTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATC 463 || |||||||||||||| || |||||||||| || ||||| ||||||| |||||||||| Sbjct 5579738 GTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAA-CTGGAATTGCTAGTAATC 5579680 Query 464 GTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 | | |||| ||| | |||||||| |||||||| Sbjct 5579679 GCCGGTCAGCCATACGGCGGTGAATTCGTTCCCG 5579646 Score = 89.7 bits (98), Expect = 2e-15 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 394 CCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATC 453 ||| ||| ||| ||||||||||| || || |||||||||| || ||||||| |||||| Sbjct 5563006 CCAAAAACCTGTCCTCAGTTCGGAGTGCAGGCTGCAACTCGCCTGCATGAAGCCGGAATC 5562947 Query 454 GCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 ||||||||||| | |||| ||| | ||||||| ||||| || Sbjct 5562946 GCTAGTAATCGCCGGTCAGCCATACGGTGGTGAATTCGTTCACG 5562903 >seq8 Length=183400 Score = 82.4 bits (90), Expect = 2e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 16 GAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAA 75 |||||||||| |||| ||| |||| ||||||| |||| |||||||| ||||||||||| Sbjct 132422 GAAACTCAAATGAATCGACCAAGACCTGCACAAGAGGTGCAGCATGTGATTTAATTCGAA 132363 Query 76 GCAACGCGAAGAACCTTA 93 |||| || ||||| ||| Sbjct 132362 ACAACACGCAGAACATTA 132345 >seq5 Length=16150104 Score = 82.4 bits (90), Expect = 2e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 16 GAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAA 75 |||||||||| |||| ||| |||| ||||||| |||| |||||||| ||||||||||| Sbjct 14331397 GAAACTCAAATGAATCGACCAAGACCTGCACAAGAGGTGCAGCATGTGATTTAATTCGAA 14331338 Query 76 GCAACGCGAAGAACCTTA 93 |||| || ||||| ||| Sbjct 14331337 ACAACACGCAGAACATTA 14331320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503978086720