Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1393 217 4e-54 seq3 149 2e-33 seq1 120 7e-25 seq6 109 1e-21 seq223 78.8 2e-12 >seq1393 Length=1208 Score = 217 bits (240), Expect = 4e-54 Identities = 159/185 (86%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| |||||||||| |||||||| | || Sbjct 265 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCATCAGGCTTTTGCCCATTGCGGAA 206 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| Sbjct 205 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCGTGTCTCAGTCCCAGTGTGGCTGA 146 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 145 TCATCCTCTCGGACCAGCTACAGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 86 Query 191 TAATC 195 ||||| Sbjct 85 TAATC 81 Score = 203 bits (224), Expect = 8e-50 Identities = 156/185 (84%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 944 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 1003 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||| ||||||||||||| ||||||||||| |||||||||||| ||| |||||||| Sbjct 1004 AATTCCCTACTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCACTGTGGCTGA 1063 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| ||| |||||| ||| || ||| || |||||||||| Sbjct 1064 TCATCCTCTCGGACCAGCTACTGATTATCGCCTTGGTAAGCTATTGCCTGGCCAACTAGC 1123 Query 191 TAATC 195 ||||| Sbjct 1124 TAATC 1128 >seq3 Length=15215380 Score = 149 bits (164), Expect = 2e-33 Identities = 129/159 (81%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||| | | ||| | ||||||||| ||||| || |||| ||||||||||||||| Sbjct 10554782 CTTTACGAGCGGAATTGCCCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCC 10554841 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| || | Sbjct 10554842 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGG 10554901 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCG 160 |||||||| || ||| |||||||||| | ||| ||| Sbjct 10554902 TGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCG 10554940 >seq1 Length=19836964 Score = 120 bits (132), Expect = 7e-25 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 95 GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGA 154 ||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| || Sbjct 14157783 GGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGA 14157724 Query 155 TCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 | |||||| ||| || ||| || | |||||||||||||| Sbjct 14157723 TAATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 14157683 >seq6 Length=18523719 Score = 109 bits (120), Expect = 1e-21 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 ||||| | || |||||||| ||||||||||| ||||||||||| |||||||||||| ||| Sbjct 10509666 CATTGCGGAAAATTCCCCAGTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCA 10509725 Query 121 GTGTGGCTGGTCATCCTCTC 140 ||||||||| |||||||||| Sbjct 10509726 GTGTGGCTGATCATCCTCTC 10509745 Score = 78.8 bits (86), Expect = 2e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 36 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 95 ||||| ||| | |||||||| || |||||| | || |||||||||||||||||||||||| Sbjct 7436903 GGCATTGCTCCGTCAGGCTTTCGTCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 7436962 Query 96 GAG 98 ||| Sbjct 7436963 GAG 7436965 >seq223 Length=31376 Score = 78.8 bits (86), Expect = 2e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 36 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 95 ||||| ||| | |||||||| || |||||| | || |||||||||||||||||||||||| Sbjct 6476 GGCATTGCTCCGTCAGGCTTTCGTCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 6535 Query 96 GAG 98 ||| Sbjct 6536 GAG 6538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222382189632