Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1393 320 5e-85 seq3 232 2e-58 seq1 123 7e-26 seq6 95.1 4e-17 seq223 78.8 3e-12 >seq1393 Length=1208 Score = 320 bits (354), Expect = 5e-85 Identities = 278/343 (81%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||| ||||| | Sbjct 74 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCTGTAGCTGGT 133 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| | | ||||||||||||||||| Sbjct 134 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCTAGACTCCTACGGGAGGCAG 193 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||||||||||||||| ||||| |||||||| | || Sbjct 194 CAGTGGGGAATTTTCCGCAATGGGCAAAAGCCTGATGGAGCAATGCCGCGTGGAGGTAGA 253 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||| | || ||| | | || ||||| |||||||||| || ||| Sbjct 254 AGGCCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGGAAT 313 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||| ||||||||||||||||| ||| || ||||||||||| Sbjct 314 AAGCATCGGCTAACTCTGTGCTAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 373 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| | ||||||| || ||||||| Sbjct 374 GAATGA-TTGGGCGTAAAGCATCTATAGGTGGCTTTTTAAGTC 415 Score = 291 bits (322), Expect = 2e-76 Identities = 270/340 (79%), Gaps = 3/340 (1%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 |||||||||||||||||| ||| || |||||||||||||| ||||||||| | | | Sbjct 1132 GTCTGATTAGCTAGTTGGCCAGGCAATAGCTTACCAAGGCGATAATCAGTAGCTGGTCCG 1073 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| |||||| ||| |||||||||||| ||| ||||||| |||||||||||| Sbjct 1072 AGAGGATGATCAGCCACAGTGGGACTGAGACACGGCCCAGACTCCTATGGGAGGCAGCAG 1013 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 | |||||| || | |||||||| ||||||||| | ||||| |||||||| | ||||| Sbjct 1012 TAGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGG 953 Query 343 CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAG 400 ||| |||||| | || || | | || ||||| |||||||||| || ||| ||| Sbjct 952 CCTACGGGTCCTGAACTACTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGGAATAAG 893 Query 401 CCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAA 460 ||||||||| ||||||||||||||||||||| ||| || |||||||||||||| Sbjct 892 AATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATAAAGAGGATGCAAGCGTTATCCGGAA 833 Query 461 TTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | | | |||||||||| || | |||||| || ||||||| Sbjct 832 TGA-TTGGGCGTAAAGCGTCTGCAGGTGGCTTTTTAAGTC 794 >seq3 Length=15215380 Score = 232 bits (256), Expect = 2e-58 Identities = 213/266 (80%), Gaps = 5/266 (2%) Strand=Plus/Minus Query 230 GATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAA 289 |||| |||||| || |||||||||||| || ||||| ||||| ||||||||||||||| Sbjct 10554912 GATCAGCCACACCGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAA 10554853 Query 290 TATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--TTC 347 | ||| ||||||||| ||||||||| |||||| ||||||| || ||||| | ||| Sbjct 10554852 TCTTGGACAATGGGCGCAAGCCTGATCCAGCAATATTGCGTGAGTGAAGAAGGGCAATTC 10554793 Query 348 GGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCCCG 405 | |||||||||||| || || | | ||| ||||| ||| ||||| ||||||||| Sbjct 10554792 CGCTCGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACATGACTCGAGGAAGAAGCCCCG 10554733 Query 406 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACT 465 ||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| ||| Sbjct 10554732 GCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTGTTCTTCGGAATGACT 10554673 Query 466 GGGGCGTAAAGGGTGCGTAGGTGGTT 491 ||||||||||| |||||| |||| Sbjct 10554672 -AGGCGTAAAGGGCACGTAGGCGGTT 10554648 >seq1 Length=19836964 Score = 123 bits (136), Expect = 7e-26 Identities = 91/106 (86%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 162 CGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCT 221 |||||||||||||||||||| ||| || |||||||||||||| ||||||||| | || Sbjct 14157678 CGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATTATCAGTAGCTGGTCT 14157737 Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCC 267 |||||| ||||| |||||| ||| |||||||||||| ||| ||||| Sbjct 14157738 GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCC 14157783 >seq6 Length=18523719 Score = 95.1 bits (104), Expect = 4e-17 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| ||||| |||||| ||| |||||||||||| ||| ||||||| ||||||||||| Sbjct 10509745 GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTATGGGAGGCAGCA 10509686 Query 282 GTGGGGAATATTGCACAATG 301 |||||||| || | ||||| Sbjct 10509685 CTGGGGAATTTTCCGCAATG 10509666 Score = 78.8 bits (86), Expect = 3e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 264 CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAAC 323 ||||||||||||||||||||||||||| || | |||||| | ||||||||| | ||||| Sbjct 7436965 CTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGACGAAAGCCTGACGGAGCAAT 7436906 Query 324 GCC 326 ||| Sbjct 7436905 GCC 7436903 >seq223 Length=31376 Score = 78.8 bits (86), Expect = 3e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 264 CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAAC 323 ||||||||||||||||||||||||||| || | |||||| | ||||||||| | ||||| Sbjct 6538 CTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGACGAAAGCCTGACGGAGCAAT 6479 Query 324 GCC 326 ||| Sbjct 6478 GCC 6476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497578179968