Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq3 210 5e-52 seq1393 131 4e-28 >seq3 Length=15215380 Score = 210 bits (232), Expect = 5e-52 Identities = 252/338 (75%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 10554751 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCA 10554692 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||||||||||| |||||| |||| | || | ||| Sbjct 10554691 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTTCATCGGGTTGAAAGTG 10554632 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| | | | || | ||| |||||| ||||| | | || ||||| || Sbjct 10554631 AAAGTC---GTCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 10554575 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || ||||||||| | ||| || |||||||| ||| | | |||||| ||| | Sbjct 10554574 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACGGATCTACGAAGGAACGCCAAAAG 10554515 Query 241 CGAAGGCGGCTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 ||||||| ||| |||| || || | ||| ||| | ||||||| |||||||| ||| Sbjct 10554514 CGAAGGCAGCTCTCTGGGTCTCTACC-GACGCTGGTGTGCGAAAGCATGGGGAGCGAACG 10554456 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||| |||||||||||||| Sbjct 10554455 GGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 10554418 >seq1393 Length=1208 Score = 131 bits (144), Expect = 4e-28 Identities = 267/402 (66%), Gaps = 46/402 (11%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||| ||||||||||||||||| ||| || ||| Sbjct 306 TGGGGAATAAGCATCGGCTAACTCTGTGCTAGCAGCCGCGGTAATACAGAGGATGCAAGC 365 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| | ||||||| || ||||||| | || ||| Sbjct 366 GTTATCCGGAATGATTGGGCGTAAAGCATCTATAGGTGGCTTTTTAAGTCCGCCGTTAAA 425 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | Sbjct 426 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTAC---------- 475 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||| | | |||||||||| || | |||||| | |||||| Sbjct 476 ---------------GTAGAGAT--AATGCGTAGAGATCGAAAAGAACACTAACGGCGAA 518 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || || ||| | | |||||||||||| ||||||| ||||| | || ||||| Sbjct 519 AGCACTCTGTTGGGCCGACACTGACACTGAGAGACGAAAGCTGGGGGAACGAATGGGATT 578 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT----AA 360 ||||||| | |||||||||||| |||||||| | | | ||| || Sbjct 579 AGATACC-----------CCCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 626 Query 361 GTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGG 402 ||||| |||| | ||| ||||| ||||||| || ||||| Sbjct 627 GTGCT---GTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGG 665 Score = 122 bits (134), Expect = 2e-25 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| ||||||||||||||||||||| ||| || ||||||||||||||| | Sbjct 889 CGGCTAACTCTGTGCCAGCAGCCGCGGTAATAAAGAGGATGCAAGCGTTATCCGGAATGA 830 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 ||||||||||| || | |||||| || ||||||| | || ||| ||| |||||||| Sbjct 829 TTGGGCGTAAAGCGTCTGCAGGTGGCTTTTTAAGTCCGCCGTCAAATCCTAGGGCTCAAC 770 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGC 183 || || || | |||||| | ||| |||||| | || ||| Sbjct 769 CCTGGACAGGCGGTGGAAACTCCCAAGCTTGAGTGCGGTAGAGGC 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203182469376