Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6 230 8e-58 seq712 201 4e-49 seq3 113 1e-22 >seq6 Length=18523719 Score = 230 bits (254), Expect = 8e-58 Identities = 174/203 (86%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 208 GTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATT 267 |||||||||||||||||| | | || | |||||||||||||||||||||||||| ||| Sbjct 5494676 GTAGTGGTATTTCACTTGAGGCAAATC---TCCCACTTATTCTACACCTCTCAAGTAATT 5494732 Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 || ||||| | |||| ||||||| | |||||||||||||||| |||||||||| |||| Sbjct 5494733 ACATAAAGTTGTACTATAGTCAAGTTTAACAGGGTCTTCTTTCTCCGCTGATTCGACCAA 5494792 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 | |||||| ||||| |||||||||| | ||||||||||| ||||| || ||||||||||| Sbjct 5494793 GACCGTTCTCTTGGATGTGGTTTCGTTTGATAGTAGATAAGGACACTGAGAATCTCGTTA 5494852 Query 388 ATCCATTC-ATGCGCGTCACTAA 409 | | |||| |||||||||||||| Sbjct 5494853 ACCAATTCTATGCGCGTCACTAA 5494875 Score = 78.8 bits (86), Expect = 3e-12 Identities = 89/118 (75%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 21 GAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTG 80 ||||||||||||||| |||| | |||| | || |||||||| ||| ||| || | Sbjct 5494515 GAGATTTCTGTTCTCATTGAGCTCATTTTAGAAAACATGCGTTATCTTTTCACATATATT 5494574 Query 81 CCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGC-GAAG 137 || || | |||||||| |||| |||||||| || ||||||||| ||| || |||| Sbjct 5494575 CCACCAAATGAAAACTCCCAACCTAACAATGTCCTCCACCCGGATCAGCCAGCTGAAG 5494632 >seq712 Length=5667 Score = 201 bits (222), Expect = 4e-49 Identities = 188/230 (82%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCT-GTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 |||||| |||||| ||||||||| |||||| |||| | ||||||||||||||||||| Sbjct 230 CTTTTGTTCTACACGAGATTTCTAGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTAT 171 Query 66 GGTTTAACAGATGTGCCGCCCCAGCC-AAACTCCCCACCTGACAATGTCATCAACCCGGA 124 |||||||||||||||||||||||| |||||||||||||||||||||| || |||||| Sbjct 170 CTTTTAACAGATGTGCCGCCCCAGCCAAAACTCCCCACCTGACAATGTCCTCCGCCCGGA 111 Query 125 TCGGCCCG-CGAAG-GA-CCTTAACG-CCAGAAAATGGTCGGTGAAGACCAGT-TCCGCT 179 |||||||| ||||| || |||| | ||| |||| | | || || || |||| | Sbjct 110 TCGGCCCGCCGAAGCGAGCCTTGGGGTCCAAAAAAGAGGGGTTGTTACCCCGTCTCCGAT 51 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC 229 ||| || ||||||||| |||| ||| |||||||||||||||||||||| Sbjct 50 TCACGGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCC 1 >seq3 Length=15215380 Score = 113 bits (124), Expect = 1e-22 Identities = 93/113 (82%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 210 AGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTC 269 ||| |||||||| ||| | |||| | || ||||||||||||| ||||||||||||||| Sbjct 10938988 AGTAGTATTTCATTTGTGTCGAATC---TCACACTTATTCTACATCTCTCAAGTCATTTC 10939044 Query 270 ACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCC 322 | ||| || || |||| |||| ||||||| | |||||||||| ||||||| || Sbjct 10939045 ATAAAATCAGATTAGAATCAAACTCAACATGATCTTCTTTCCGCGCTGATACC 10939097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635176175136