Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1393 114 3e-23 seq3 89.7 1e-15 seq6 77.0 7e-12 >seq1393 Length=1208 Score = 114 bits (126), Expect = 3e-23 Identities = 192/279 (69%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||| |||| |||||||||||||||||||| || ||| || | Sbjct 342 GGCTGCTAGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 294 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || |||||||||| | | |||||| ||||| ||| ||||| Sbjct 293 GC------TTCTTCTCTGGGAAAAGAAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGC 241 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || | | |||||| || ||||| |||||||||||||||||| Sbjct 240 GGCATTGCTCCATCAGGCTTTTGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 181 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| | | |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 180 GAGTCTAGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACAGAT 121 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 120 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 82 Score = 105 bits (116), Expect = 1e-20 Identities = 190/279 (68%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||| ||||||| || ||| || | Sbjct 867 GGCTGCTGGCACAGAGTTAGCCGATTCTTATTCCCCAGATACCGTCAT-----------T 915 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || ||||| |||| | | |||||| ||||| ||| ||||| Sbjct 916 GC------TTCTTCTCTGGGAAAAGTAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGC 968 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| ||||||||||||| ||| Sbjct 969 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCTACTGCTGCCTCCCATAG 1028 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 1029 GAGTCTGGGCCGTGTCTCAGTCCCACTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 1088 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | || ||| || || || ||| |||| ||||| Sbjct 1089 TATCGCCTTGGTAAGCTATTGCCTGGCCAACTAGCTAAT 1127 >seq3 Length=15215380 Score = 89.7 bits (98), Expect = 1e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| |||| || || |||||| |||| ||||| || Sbjct 10554800 CCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCA 10554859 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGG 211 |||||||| ||||| ||||| || |||||||||||| || ||||| Sbjct 10554860 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGG 10554906 >seq6 Length=18523719 Score = 77.0 bits (84), Expect = 7e-12 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 146 CATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCA 205 ||||| || ||||| || ||||||||||| ||||||| ||| |||||||||||| ||| Sbjct 10509666 CATTGCGGAAAATTCCCCAGTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCA 10509725 Query 206 ATGTGGGGGACCTTCCTCTC 225 ||||| || | ||||||| Sbjct 10509726 GTGTGGCTGATCATCCTCTC 10509745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068784427584