Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq16236 215 1e-53 seq89 192 1e-46 seq7 183 6e-44 seq3 125 1e-26 seq1 96.9 7e-18 >seq16236 Length=153324 Score = 215 bits (238), Expect = 1e-53 Identities = 232/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 101081 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 101022 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 101021 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 100962 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||| ||||| || | Sbjct 100961 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCTCCTCGG 100902 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 100901 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 100858 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 100857 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 100799 Query 300 CCACT 304 ||||| Sbjct 100798 CCACT 100794 Score = 215 bits (238), Expect = 1e-53 Identities = 232/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 137414 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 137473 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 137474 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 137533 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||| ||||| || | Sbjct 137534 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCTCCTCGG 137593 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 137594 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 137637 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 137638 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 137696 Query 300 CCACT 304 ||||| Sbjct 137697 CCACT 137701 >seq89 Length=122847 Score = 192 bits (212), Expect = 1e-46 Identities = 222/297 (75%), Gaps = 18/297 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | || || |||| ||||||| | || || ||||||||||||||||||||| Sbjct 117067 GGCATTGCTCCGTCCGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 117008 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 117007 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 116948 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||| ||||| || | Sbjct 116947 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCTCCTCGG 116888 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 116887 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 116844 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGT 296 |||||||| ||| ||| ||| || |||||||| || ||| ||||||||||||| Sbjct 116843 TGTTTCCAACTGTTGGTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGT 116788 >seq7 Length=11725536 Score = 183 bits (202), Expect = 6e-44 Identities = 142/169 (84%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||||||||| Sbjct 1725615 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 1725674 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||| ||| Sbjct 1725675 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGC 1725734 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 |||||| |||||| ||||||||||| |||||| | ||| ||||| || Sbjct 1725735 CTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCTC 1725783 >seq3 Length=24928530 Score = 125 bits (138), Expect = 1e-26 Identities = 133/173 (77%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| |||| | |||| |||||||| || || ||||||||||||||| ||||||||| | Sbjct 3271912 GCTCCATCTAGATTTCACCCATTGTCGAAAATTCCCCACTGCTGCCTCTCGTAGGAGTTT 3271971 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTAC--CGATCGTC 124 || || |||| |||||| |||||| | ||| |||||| | || ||||| |||| || Sbjct 3271972 GGATCGGGTCTTCGTCCCAGTGTGGCTGGTCATCCTCTCGGACCAGCTACTGTGATCATC 3272031 Query 125 GGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAG-CCCATCT 176 | ||| || |||||| | ||||||| || |||||| | ||| || ||| ||| Sbjct 3272032 GCCTTAGTAAGCTATTGTTTCACCAATTAGCTAATCAGACGCAAGTCCCTTCT 3272084 Score = 109 bits (120), Expect = 1e-21 Identities = 207/302 (69%), Gaps = 16/302 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||| ||||| || || |||||| ||||||| |||| Sbjct 15902819 GGCATTGCTCCGTCAGGCTTTCACCCGTTGTGGAAAATTTTCCACTGTTGCCTCCTGTAG 15902878 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||| |||||||||||| |||| | ||||| | ||| | ||| || | |||| || Sbjct 15902879 AAGTTTGGGCCGTGTCTTAGTCGCTGTGTGGTTGATCATCATCTTAGATCAACTACTAAT 15902938 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | | ||||| |||||| ||||||||||| |||||| | ||| || || || | Sbjct 15902939 CACTGTTTTGGTAAGCTATTGGCTCACCAACTAGCTAATCAGACGCAAGGCCCTCCTCGG 15902998 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 ||| | |||| | ||| ||| | | | ||| ||||||||| | | Sbjct 15902999 GCG--GATTCTT---------CCTTTTGC--TCCCCAGTC--GATGGGGTATTAGCATCC 15903043 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 ||||||| ||| |||| || || |||||||| || || ||||| ||| |||||| Sbjct 15903044 GTTTCCAGCTGTTGTTCCCCTTCTAAGGGCAGGTT-CTTACTCGTTACCCACTTGTCCGC 15903102 Query 301 CA 302 || Sbjct 15903103 CA 15903104 >seq1 Length=18577331 Score = 96.9 bits (106), Expect = 7e-18 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | |||| |||| |||| | | || || ||| ||| |||| |||| ||| Sbjct 7205381 GGCATTGCTCCGTCAGACTTTCGCCCACTAAGGAAAATTCCCGACTACTGCTTCCCTTAG 7205322 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||| ||||||||| ||| || |||| ||| | |||||||| | |||| ||| Sbjct 7205321 GAGTCTAGGCCGTGTCCCAGCCCATGTGTGACCGACTATCCTCTCAGAACAGCTATTGAT 7205262 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGC 166 | ||| |||| | ||||| ||||||||||| ||||| | ||| Sbjct 7205261 CATCGTCTTGATAAACTATTGCCTCACCAACTAATTAATCAGACGC 7205216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998237899776