Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq16236 262 1e-67 seq89 214 4e-53 seq7 214 4e-53 seq3 141 2e-31 seq1 107 5e-21 seq8 87.8 4e-15 >seq16236 Length=153324 Score = 262 bits (290), Expect = 1e-67 Identities = 305/410 (74%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 101112 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 101053 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 101052 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 100993 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 100992 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 100933 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | ||| || | || ||| ||| |||| Sbjct 100932 ACTAGCTAATCAGACGCAAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 100884 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 100883 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 100826 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 100825 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 100780 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 100779 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 100733 Score = 262 bits (290), Expect = 1e-67 Identities = 305/410 (74%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 137383 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 137442 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 137443 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 137502 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 137503 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 137562 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | ||| || | || ||| ||| |||| Sbjct 137563 ACTAGCTAATCAGACGCAAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 137611 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 137612 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 137669 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 137670 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 137715 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 137716 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 137762 >seq89 Length=122847 Score = 214 bits (236), Expect = 4e-53 Identities = 162/191 (85%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | || ||||| |||||||| Sbjct 117098 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCCGGCTTTCGCCCATT 117039 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 117038 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 116979 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 116978 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 116919 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 116918 ACTAGCTAATC 116908 >seq7 Length=11725536 Score = 214 bits (236), Expect = 4e-53 Identities = 162/191 (85%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||| ||| ||| | |||||||| |||||||| Sbjct 1725578 TTCACGACCCGTGGGCCTTCTACCTCCACGCGACATTGCTCCGTCAGGCTTTCGCCCATT 1725637 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1725638 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 1725697 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 1725698 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 1725757 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 1725758 ACTAGCTAATC 1725768 >seq3 Length=24928530 Score = 141 bits (156), Expect = 2e-31 Identities = 128/160 (80%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 38 CATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGA 97 ||||||| |||| | || | |||||||| || |||||||||||||||||| ||||||| Sbjct 3271908 CATGGCTCCATCTAGATTTCACCCATTGTCGAAAATTCCCCACTGCTGCCTCTCGTAGGA 3271967 Query 98 GTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA--GGGAT 155 || |||| || |||| || ||||||||||||||||||||||| ||||||||| | ||| Sbjct 3271968 GTTTGGATCGGGTCTTCGTCCCAGTGTGGCTGGTCATCCTCTCGGACCAGCTACTGTGAT 3272027 Query 156 CGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 | |||||| || || ||| | |||| ||||||||| Sbjct 3272028 CATCGCCTTAGTAAGCTATTGTTTCACCAATTAGCTAATC 3272067 Score = 122 bits (134), Expect = 2e-25 Identities = 275/410 (67%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || ||||| | |||||||| | | || ||||||| ||| | |||||||| | ||| || Sbjct 15902788 TTCACAACTCATGGGCCTTCTACCTCCATGCGGCATTGCTCCGTCAGGCTTTCACCCGTT 15902847 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||| || ||| |||||| ||||||| |||| ||| ||| |||||||| ||| | |||| Sbjct 15902848 GTGGAAAATTTTCCACTGTTGCCTCCTGTAGAAGTTTGGGCCGTGTCTTAGTCGCTGTGT 15902907 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 || || ||||| ||| ||| || ||| ||| | | ||| || ||| | | ||| Sbjct 15902908 GGTTGATCATCATCTTAGATCAACTACTAATCACTGTTTTGGTAAGCTATTGGCTCACCA 15902967 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | ||| || | || || ||| |||| Sbjct 15902968 ACTAGCTAATCAGACGCAAGGCCCTCC--------TCGGGCGGA--TTCTTCCT-TTTGC 15903016 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | || ||| ||||||||| |||||||||| ||| | ||||| | |||| Sbjct 15903017 TCCCCAGTCG--ATGGGGTATTAGCATCCGTTTCCAGCTGTTGTTCCCCTTCTAAGGGCA 15903074 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||| ||| |||||||| | | ||| || || || Sbjct 15903075 GGTTCTTACTCGTTACCCACTTGTCCGCCATT-----GAGAA-CACCA---------CTT 15903119 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||| |||||||||||||||| || ||| |||| | |||| |||||| Sbjct 15903120 TT--CGTCCGACTTGCATGTGTTAAGCATGCTGCCAACATTCATTCTGAG 15903167 >seq1 Length=18577331 Score = 107 bits (118), Expect = 5e-21 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27 CATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGC 86 ||| ||| |||||| ||| | |||| ||| |||||| | | || |||||| ||| |||| Sbjct 7205390 CATCCACACGGCATTGCTCCGTCAGACTTTCGCCCACTAAGGAAAATTCCCGACTACTGC 7205331 Query 87 CTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCA 146 |||| ||||||||| | ||||||| ||| | ||||| | | ||||||||||| || Sbjct 7205330 TTCCCTTAGGAGTCTAGGCCGTGTCCCAGCCCATGTGTGACCGACTATCCTCTCAGAACA 7205271 Query 147 GCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||| |||| ||| || | | | ||| || | ||||||| ||||| Sbjct 7205270 GCTATTGATCATCGTCTTGATAAACTATTGCCTCACCAACTAATTAATC 7205222 >seq8 Length=21523998 Score = 87.8 bits (96), Expect = 4e-15 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 3797600 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 3797541 Query 65 GTGCAATATTCCCCACTGCTGCC 87 | | || |||||||||||||||| Sbjct 3797540 GCGGAAAATTCCCCACTGCTGCC 3797518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222201531136