Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sesamum_20indicum_20[refseq_20GCF_5F000512975.1_202014-01-06] 16,236 sequences; 275,059,498 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq16236 138 2e-30 seq5 104 4e-20 seq8 78.8 2e-12 >seq16236 Length=153324 Score = 138 bits (152), Expect = 2e-30 Identities = 179/243 (74%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 104648 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAATCGACGAAATGCTTCGGG 104707 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| ||| |||| ||| | Sbjct 104708 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGGCAACC------TTTCGAA 104760 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 104761 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 104817 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 104818 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 104877 Query 249 CCT 251 ||| Sbjct 104878 CCT 104880 Score = 138 bits (152), Expect = 2e-30 Identities = 179/243 (74%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 133847 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAATCGACGAAATGCTTCGGG 133788 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| ||| |||| ||| | Sbjct 133787 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGGCAACC------TTTCGAA 133735 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 133734 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 133678 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 133677 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 133618 Query 249 CCT 251 ||| Sbjct 133617 CCT 133615 >seq5 Length=18898134 Score = 104 bits (114), Expect = 4e-20 Identities = 153/212 (72%), Gaps = 11/212 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 13002758 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAATCGACGAAATGCTTCGGG 13002699 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| ||| |||| ||| | Sbjct 13002698 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGGCAACC------TTTCGAA 13002646 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 13002645 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 13002589 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCC 220 ||| ||||||||||| ||| | ||||||| Sbjct 13002588 AGCAAGAGGAAAAGAAAGCAAAAGCGATTCCC 13002557 >seq8 Length=21523998 Score = 78.8 bits (86), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 10/143 (7%) Strand=Plus/Plus Query 96 AGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTATG 155 |||||| ||||| ||| | ||| |||| | ||| || ||||| ||| || | | Sbjct 4230028 AGATTTTCGAATAGGGCA-----GCCTTTTGA---ACTGC-TGTTGAATCCATGGGCAAG 4230078 Query 156 CAAA-GCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAG 214 |||| | || ||| ||||||||||||| ||||||| ||||||||||| ||| | | Sbjct 4230079 CAAAAGATAATCTGGCAAACTGAAACATCTTAGTAGCTAGAGGAAAAGAAAGCAAAAGCG 4230138 Query 215 ATTCCCAAAGTAGTGGCGAGCGA 237 |||||| ||||| ||| ||||| Sbjct 4230139 ATTCCCGTAGTAGCGGCAAGCGA 4230161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918250888576