Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq1 82.4 1e-13
>seq1
Length=146306
Score = 82.4 bits (90), Expect = 1e-13
Identities = 210/314 (67%), Gaps = 12/314 (4%)
Strand=Plus/Plus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG------CCGAGTG 65
|||| |||||||||| | |||| ||| || ||||| || |||| ||| | |
Sbjct 108617 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCTCAAGCAGTGGGAGGAGGCGCCGTG-G 108675
Query 66 ATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGT 125
| | |||| |||||||| ||| | |||||||| ||| | | | | || || |||
Sbjct 108676 AAGCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGT 108734
Query 126 TAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGT 185
|||||| | ||| ||||| || ||||||||| ||| | ||||| | || |
Sbjct 108735 TAAGGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACT 108790
Query 186 GGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGT 245
| | ||| |||| | |||||||| ||| || |||| ||||| ||| | |
Sbjct 108791 GCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTA 108850
Query 246 GATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGA 305
|||||| |||||||| | |||||| | | ||||||| | | || |||||||||
Sbjct 108851 AGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGA 108910
Query 306 AAGGCCAATCAAAC 319
|| |||| || |||
Sbjct 108911 AATGCCACTCGAAC 108924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 969806499840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |