Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq171 410 2e-112 seq133569 280 2e-73 seq106682 250 4e-64 seq10996 235 8e-60 >seq171 Length=61800 Score = 410 bits (454), Expect = 2e-112 Identities = 247/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 55223 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 55280 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55281 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 55340 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 55341 CCCGGGCCTGTCGGCCAAGGTTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 55400 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 55401 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTGGAAG 55460 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 55461 GCCATAGTCCCTCTAA 55476 Score = 82.4 bits (90), Expect = 1e-13 Identities = 49/50 (98%), Gaps = 1/50 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTAC 50 |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 40209 GTACAAAGGGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTAC 40257 >seq133569 Length=1223 Score = 280 bits (310), Expect = 2e-73 Identities = 169/178 (95%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 68 AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGAC 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGC 60 Query 128 CTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAA 187 |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || Sbjct 61 CTGTCGGCCAAGGTTATAGACTCGTTGAATACATCTGTGTAGCGCGCGTGCGGCCCATAA 120 Query 188 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT 245 ||| |||||| |||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 121 CATTTAAGGGTATCACAGACCTGTTATTGCCTCAAACTTTCGTGGCCTGTAAGGCCAT 178 >seq106682 Length=1441 Score = 250 bits (276), Expect = 4e-64 Identities = 177/200 (89%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||||||||||| ||||||| || |||| ||||| ||||| || |||| |||| | Sbjct 914 GTATAAAGGGCAGGGACATAGTCAATGCAAGCT-GATGAATCGCGTTTCCTAGAAATT-C 971 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 972 CTTGTTGAAGGCCAACAATTGCAATGATTTATCCCCATCACGATAAAATTTCAAAGATTA 1031 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||||||| |||||| ||||||||||||||||||| |||||| |||||| || Sbjct 1032 CCCGGGCCTGTCGACCAAGGATATAGACTCGTTGAATACATTAGTGTAATGCGCGTATGG 1091 Query 181 CCCAGAACATCTAAGGGCAT 200 |||||||||||||||||||| Sbjct 1092 CCCAGAACATCTAAGGGCAT 1111 >seq10996 Length=8369 Score = 235 bits (260), Expect = 8e-60 Identities = 158/175 (90%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 71 ACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTG 130 ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | || Sbjct 379 ACCAACAATTGCAATGATCTATCCC-ATCACGATGAAATATCAAAGATTACCCGGGCTTG 321 Query 131 TCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACAT 190 ||||||||||| |||||||||||||||||||| ||||| ||||||||| |||| ||||| Sbjct 320 TCGGCCAAGGTTATAGACTCGTTGAATACATCGGTGTAATGCGCGTGCGTCCCATAACAT 261 Query 191 CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT 245 |||||||||| | |||| ||||||||||||||||||||||||| | ||||| || Sbjct 260 CTAAGGGCATTATAGACGTGTTATTGCCTCAAACTTCCGTGGCTTGGAAGGCTAT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 749758259800