Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq171 410 2e-112
seq133569 280 2e-73
seq106682 250 4e-64
seq10996 235 8e-60
>seq171
Length=61800
Score = 410 bits (454), Expect = 2e-112
Identities = 247/256 (96%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 55223 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 55280
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55281 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 55340
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 55341 CCCGGGCCTGTCGGCCAAGGTTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 55400
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 55401 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTGGAAG 55460
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 55461 GCCATAGTCCCTCTAA 55476
Score = 82.4 bits (90), Expect = 1e-13
Identities = 49/50 (98%), Gaps = 1/50 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTAC 50
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 40209 GTACAAAGGGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTAC 40257
>seq133569
Length=1223
Score = 280 bits (310), Expect = 2e-73
Identities = 169/178 (95%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 68 AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGAC 127
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGC 60
Query 128 CTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAA 187
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 61 CTGTCGGCCAAGGTTATAGACTCGTTGAATACATCTGTGTAGCGCGCGTGCGGCCCATAA 120
Query 188 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT 245
||| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 121 CATTTAAGGGTATCACAGACCTGTTATTGCCTCAAACTTTCGTGGCCTGTAAGGCCAT 178
>seq106682
Length=1441
Score = 250 bits (276), Expect = 4e-64
Identities = 177/200 (89%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||| ||||||||||||| ||||||| || |||| ||||| ||||| || |||| |||| |
Sbjct 914 GTATAAAGGGCAGGGACATAGTCAATGCAAGCT-GATGAATCGCGTTTCCTAGAAATT-C 971
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|| ||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 972 CTTGTTGAAGGCCAACAATTGCAATGATTTATCCCCATCACGATAAAATTTCAAAGATTA 1031
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| ||||||| |||||| ||||||||||||||||||| |||||| |||||| ||
Sbjct 1032 CCCGGGCCTGTCGACCAAGGATATAGACTCGTTGAATACATTAGTGTAATGCGCGTATGG 1091
Query 181 CCCAGAACATCTAAGGGCAT 200
||||||||||||||||||||
Sbjct 1092 CCCAGAACATCTAAGGGCAT 1111
>seq10996
Length=8369
Score = 235 bits (260), Expect = 8e-60
Identities = 158/175 (90%), Gaps = 1/175 (1%)
Strand=Plus/Minus
Query 71 ACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTG 130
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | ||
Sbjct 379 ACCAACAATTGCAATGATCTATCCC-ATCACGATGAAATATCAAAGATTACCCGGGCTTG 321
Query 131 TCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACAT 190
||||||||||| |||||||||||||||||||| ||||| ||||||||| |||| |||||
Sbjct 320 TCGGCCAAGGTTATAGACTCGTTGAATACATCGGTGTAATGCGCGTGCGTCCCATAACAT 261
Query 191 CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT 245
|||||||||| | |||| ||||||||||||||||||||||||| | ||||| ||
Sbjct 260 CTAAGGGCATTATAGACGTGTTATTGCCTCAAACTTCCGTGGCTTGGAAGGCTAT 206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 749758259800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |