Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq171 244 4e-62 seq10594 123 1e-25 seq149217 95.1 5e-17 seq48153 86.0 3e-14 >seq171 Length=61800 Score = 244 bits (270), Expect = 4e-62 Identities = 225/281 (80%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 16456 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 16397 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| || ||||| ||| | | || || | ||| || ||||||||| ||||| Sbjct 16396 AACCCGTACGGCGTAAGGAAGCTAATTGGCGG--GATCCCCTTGCGGGTGCACCGTCGAC 16339 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| ||||||| |||| ||||||||||||||| Sbjct 16338 CGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGAAAGATG 16279 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| ||| ||||||||||||||||||||||||||| || |||| | Sbjct 16278 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGAAGCGATA 16219 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 16218 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 16178 Score = 156 bits (172), Expect = 2e-35 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||| ||||||||| | || ||| |||||||| | || || |||||| Sbjct 16763 CGAGTCGGGTTGTTTGAGAATGCAGCCCCAAGCGGGCGGTAAATTCCGTCCAAGGCTAAA 16704 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| |||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 16703 TACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 16644 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 16643 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 16603 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 52418 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGCCAGGACGAAGTCAGG 52359 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 52358 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAGCTGGGT 52299 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 52298 ATAGGGGCGA 52289 Score = 95.1 bits (104), Expect = 5e-17 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||||||||||||||||||||| || |||| | ||| ||||||||||| ||||| | | Sbjct 928 CCAGAGGAAACTCTGGTGGAGGCCCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACT 869 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 868 TGGGTATAGGGGCGA 854 Score = 75.2 bits (82), Expect = 5e-11 Identities = 69/87 (79%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG---TGT 461 || ||||||||| |||||||||||||||||||||||| | |||||| ||||| || Sbjct 52604 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATTGGGCTCTGC 52545 Query 462 CAAACCCGTGCGCGTAATGAAAGTGAA 488 ||||| ||| |||||||||||| Sbjct 52544 GAAACCTAAAGGCGAAATGAAAGTGAA 52518 >seq10594 Length=7444 Score = 123 bits (136), Expect = 1e-25 Identities = 117/147 (80%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||| || ||||| ||| |||| |||||| | | ||||| ||||||| Sbjct 1614 GAGTCGGTTTGCTTGAGAGTGCAGACTTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 1673 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| |||||||||||| |||||||| |||| ||||| ||||||| |||||| | Sbjct 1674 AT-GACCACGAGACCGATAGCACACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAA 1732 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185 |||||||| || || |||||||| || Sbjct 1733 GAGAGAGTTCAAGAGTACGTGAAACTG 1759 >seq149217 Length=1129 Score = 95.1 bits (104), Expect = 5e-17 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||| ||||| ||| | | ||| |||||||| | || | |||||| Sbjct 982 CGAGTCGGGTTGTTTGAGAATGTAGCCCCCAGCGGGCGGTAAATTCCGTCCATGGCTAAA 1041 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 || ||| |||||||||||||| ||||||| | || |||||||||||| ||| Sbjct 1042 TAGAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGAAAAGATGAAAAGGACT 1096 >seq48153 Length=2635 Score = 86.0 bits (94), Expect = 3e-14 Identities = 99/130 (76%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 2495 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 2554 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | |||||| ||| | | || | || ||| || ||||||||| ||||| Sbjct 2555 AACCCGTACGGCGTAAGGAAGCTAATTGGCG--GGATCCCCTTGCGGGTGCACCGTCGAC 2612 Query 523 CGATCCTGAT 532 ||| | |||| Sbjct 2613 CGACCTTGAT 2622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2073399406000