Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq171 244 4e-62
seq10594 123 1e-25
seq149217 95.1 5e-17
seq48153 86.0 3e-14
>seq171
Length=61800
Score = 244 bits (270), Expect = 4e-62
Identities = 225/281 (80%), Gaps = 4/281 (1%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|||||||||||| ||||||||||||||||||| |||| | ||||||| ||| | |
Sbjct 16456 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 16397
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522
||||||| || ||||| ||| | | || || | ||| || ||||||||| |||||
Sbjct 16396 AACCCGTACGGCGTAAGGAAGCTAATTGGCGG--GATCCCCTTGCGGGTGCACCGTCGAC 16339
Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582
||| | |||| | | || || || |||| ||||||| |||| |||||||||||||||
Sbjct 16338 CGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGAAAGATG 16279
Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642
||||||||||||||| ||| ||||||||||||||||||||||||||| || |||| |
Sbjct 16278 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGAAGCGATA 16219
Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 16218 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 16178
Score = 156 bits (172), Expect = 2e-35
Identities = 131/161 (81%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98
||||||| |||||||| ||||||||| | || ||| |||||||| | || || ||||||
Sbjct 16763 CGAGTCGGGTTGTTTGAGAATGCAGCCCCAAGCGGGCGGTAAATTCCGTCCAAGGCTAAA 16704
Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| ||| |||||||||||||| ||||||| | || ||||||||||||| |||||| |
Sbjct 16703 TACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 16644
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| ||| || | ||||||||| | |||||||||
Sbjct 16643 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 16603
Score = 136 bits (150), Expect = 2e-29
Identities = 108/130 (83%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || |||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 52418 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGCCAGGACGAAGTCAGG 52359
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
|||||| ||| |||||| || |||| ||||| ||||||||||||||||| | |||||
Sbjct 52358 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAGCTGGGT 52299
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 52298 ATAGGGGCGA 52289
Score = 95.1 bits (104), Expect = 5e-17
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
||||||||||||||||||||||| || |||| | ||| ||||||||||| ||||| | |
Sbjct 928 CCAGAGGAAACTCTGGTGGAGGCCCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACT 869
Query 669 TGGGTATAGGGGCGA 683
|||||||||||||||
Sbjct 868 TGGGTATAGGGGCGA 854
Score = 75.2 bits (82), Expect = 5e-11
Identities = 69/87 (79%), Gaps = 3/87 (3%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG---TGT 461
|| ||||||||| |||||||||||||||||||||||| | |||||| ||||| ||
Sbjct 52604 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATTGGGCTCTGC 52545
Query 462 CAAACCCGTGCGCGTAATGAAAGTGAA 488
||||| ||| ||||||||||||
Sbjct 52544 GAAACCTAAAGGCGAAATGAAAGTGAA 52518
>seq10594
Length=7444
Score = 123 bits (136), Expect = 1e-25
Identities = 117/147 (80%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| ||| ||| || ||||| ||| |||| |||||| | | ||||| |||||||
Sbjct 1614 GAGTCGGTTTGCTTGAGAGTGCAGACTTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 1673
Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| | ||| |||||||||||| |||||||| |||| ||||| ||||||| |||||| |
Sbjct 1674 AT-GACCACGAGACCGATAGCACACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAA 1732
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185
|||||||| || || |||||||| ||
Sbjct 1733 GAGAGAGTTCAAGAGTACGTGAAACTG 1759
>seq149217
Length=1129
Score = 95.1 bits (104), Expect = 5e-17
Identities = 90/115 (78%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98
||||||| |||||||| ||||| ||| | | ||| |||||||| | || | ||||||
Sbjct 982 CGAGTCGGGTTGTTTGAGAATGTAGCCCCCAGCGGGCGGTAAATTCCGTCCATGGCTAAA 1041
Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153
|| ||| |||||||||||||| ||||||| | || |||||||||||| |||
Sbjct 1042 TAGAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGAAAAGATGAAAAGGACT 1096
>seq48153
Length=2635
Score = 86.0 bits (94), Expect = 3e-14
Identities = 99/130 (76%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463
|||||||||||| ||||||||||||||||||| |||| | ||||||| ||| | |
Sbjct 2495 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 2554
Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522
||||||| | |||||| ||| | | || | || ||| || ||||||||| |||||
Sbjct 2555 AACCCGTACGGCGTAAGGAAGCTAATTGGCG--GGATCCCCTTGCGGGTGCACCGTCGAC 2612
Query 523 CGATCCTGAT 532
||| | ||||
Sbjct 2613 CGACCTTGAT 2622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2073399406000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |