Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq1 132 7e-29
seq44559 75.2 2e-11
>seq1
Length=146306
Score = 132 bits (146), Expect = 7e-29
Identities = 175/243 (72%), Gaps = 20/243 (8%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 109978 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 109920
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || || ||||| ||
Sbjct 109919 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTTCGACCCCCT------------- 109873
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | |||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 109872 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 109819
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| | |||||||||||||| |
Sbjct 109818 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGG 109759
Query 246 GTA 248
|||
Sbjct 109758 GTA 109756
>seq44559
Length=2800
Score = 75.2 bits (82), Expect = 2e-11
Identities = 84/110 (76%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||| ||||| ||||| |||||||||| ||| ||| | ||| |
Sbjct 2273 GGCACCCCTTCTCCCGGAGTTATGGGGCTATTTTGCCGAGTTCTTTAGAGAGAGTAGTCT 2214
Query 201 CGAACGCCTTAGTATTCTCTACCTG-ACC-ACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||| | ||| ||||||| ||||| ||||
Sbjct 2213 CGCGCCCCTAGGTATTCTCTACTGGTACCTTCCTGTGTTGGTTTCGGGTA 2164
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692329967560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |