Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1 132 7e-29 seq44559 75.2 2e-11 >seq1 Length=146306 Score = 132 bits (146), Expect = 7e-29 Identities = 175/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 109978 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 109920 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || || ||||| || Sbjct 109919 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTTCGACCCCCT------------- 109873 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | |||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 109872 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 109819 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| | |||||||||||||| | Sbjct 109818 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGG 109759 Query 246 GTA 248 ||| Sbjct 109758 GTA 109756 >seq44559 Length=2800 Score = 75.2 bits (82), Expect = 2e-11 Identities = 84/110 (76%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||| ||||| ||||| |||||||||| ||| ||| | ||| | Sbjct 2273 GGCACCCCTTCTCCCGGAGTTATGGGGCTATTTTGCCGAGTTCTTTAGAGAGAGTAGTCT 2214 Query 201 CGAACGCCTTAGTATTCTCTACCTG-ACC-ACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||| | ||| ||||||| ||||| |||| Sbjct 2213 CGCGCCCCTAGGTATTCTCTACTGGTACCTTCCTGTGTTGGTTTCGGGTA 2164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692329967560