Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq10594 98.7 5e-19 seq171 75.2 5e-12 seq149217 71.6 6e-11 >seq10594 Length=7444 Score = 98.7 bits (108), Expect = 5e-19 Identities = 84/102 (82%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| |||| | ||||| |||||||||||||||||||| Sbjct 1397 GGAAAAGAAACTAACAAGGATTCCCCTAGTAGCAGCGAGCGAACAGGGAAGAGCCCAGCG 1456 Query 61 CCGAAT-CCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGT 101 | |||| ||||| || || | | |||||| |||| |||| Sbjct 1457 CTGAATCCCCCGGGCCTCGCTCG---GCGGGAAATGTAGCGT 1495 >seq171 Length=61800 Score = 75.2 bits (82), Expect = 5e-12 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || ||||||||| |||||||||||| |||| ||||| |||||||| Sbjct 16970 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAATAGCCCAGC 16912 >seq149217 Length=1129 Score = 71.6 bits (78), Expect = 6e-11 Identities = 50/57 (88%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCA 57 |||||||||||| || |||||||||| |||||| ||||| |||| ||||| |||||| Sbjct 775 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACAGCGAGCGAACCGGGAATAGCCCA 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 229735324800