Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq1 480 2e-133
seq2 192 2e-46
seq1829 116 1e-23
>seq1
Length=146306
Score = 480 bits (532), Expect = 2e-133
Identities = 407/497 (82%), Gaps = 3/497 (1%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 105024 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 105083
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||| |||||||||||||||| |||||||| | || ||||
Sbjct 105084 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 105143
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| || | ||||| | || |||||| || | ||||||| ||||||| |||||||||
Sbjct 105144 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 105201
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240
|||||| ||| || ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 105202 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 105261
Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300
|| | || |||| || || || | |||||||||||| || ||||||||||||| |||
Sbjct 105262 CAACGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 105321
Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360
|||||||| ||||||||||||||||| ||||| |||||||||||||||||| | ||
Sbjct 105322 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 105381
Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420
|||||| |||| |||||||| ||| || |||| ||| || ||||||||||||||
Sbjct 105382 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGTTCGGATTG 105441
Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479
|| |||||||||| || ||||||| ||||||||||||||||| | |||| ||| |
Sbjct 105442 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 105501
Query 480 CGGTGAATACGTTCCCG 496
|||||||| ||||||||
Sbjct 105502 CGGTGAATTCGTTCCCG 105518
>seq2
Length=199390
Score = 192 bits (212), Expect = 2e-46
Identities = 185/236 (78%), Gaps = 1/236 (0%)
Strand=Plus/Minus
Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326
||||||| |||| | || ||||| ||| ||||| |||||||| || |||| ||||||||
Sbjct 180946 GACTGCCAGTGATATACTGGAGGGAGGAGGGGATGACGTCAAGTCCGCATGGCCCTTATG 180887
Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386
||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| |
Sbjct 180886 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 180827
Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446
|| ||||| || ||| ||||||||||||||| |||||||||||| | ||||||
Sbjct 180826 GCGAATCCGGAAAGATTGC-CTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGT 180768
Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502
|||||||||||||||||| ||||||||||| ||||||||| || |||| ||||
Sbjct 180767 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 180712
Score = 158 bits (174), Expect = 4e-36
Identities = 180/242 (74%), Gaps = 21/242 (9%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 181685 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 181626
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT-----------CC 109
|||||||||||||| ||||||| | |||||||||| ||||||||
Sbjct 181625 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAAGAAAA 181566
Query 110 TCTGACCCCTCTAGAGATAGAGGTT----TCCCCTTCGGGGGACAGAGTGACAGGTGATG 165
||| || || |||||| || | || | | ||||||| ||
Sbjct 181565 CCTGTCCTTAATA-AGATAGGTCTTATAATAAACTAAG-----CTTTCATACAGGTGCTG 181512
Query 166 CATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACC 225
||||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||||
Sbjct 181511 CATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGTCCTGAAACGAGCGCAACC 181452
Query 226 CT 227
||
Sbjct 181451 CT 181450
>seq1829
Length=20165
Score = 116 bits (128), Expect = 1e-23
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 210 CGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGAC 269
|| |||||| |||||||| |||||||||| | | |||| || || || | ||
Sbjct 10076 CGTAACGAGTGCAACCCTCGTTTTTAGTTGCCAACGTGGAGTTTGGAACCCTGAACAGAA 10017
Query 270 TGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATT 329
| |||||| || ||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct 10016 CGTCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATTCCC 9957
Query 330 TGGGCTACACACGTGCTACAAT 351
||||| ||||||||||||||||
Sbjct 9956 TGGGCGACACACGTGCTACAAT 9935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1499371891200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |