Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq171 315 1e-83
seq133569 235 9e-60
seq10996 224 2e-56
>seq171
Length=61800
Score = 315 bits (348), Expect = 1e-83
Identities = 227/261 (87%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55367 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 55426
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | | ||||||| | |||||||||||||||||| |||
Sbjct 55427 CCTGTTATTGCCTCAAACTTCCGTGGCCTGGAAGGCCATAGTCCCTCTAAGAAGCTAGCT 55486
Query 122 ACCAACCATAGTCGATGGG----GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
| || | | | | | |||| |||||||| | ||||||||||||||| |||||
Sbjct 55487 GCGAAGGA--GGCCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 55544
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55545 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 55604
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 55605 AGAAAGAGCTCTCAGTCTGTC 55625
>seq133569
Length=1223
Score = 235 bits (260), Expect = 9e-60
Identities = 208/259 (80%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | || ||||||||||||||||||||| ||||| |||||| ||||||||
Sbjct 80 ACTCGTTGAATACATCTGTGTAGCGCGCGTGCGGCCCATAACATTTAAGGGTATCACAGA 139
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||| | | | ||| ||| | ||| | |||||||||||| |||
Sbjct 140 CCTGTTATTGCCTCAAACTTTCGTGGCCTGTAAGGCCATAATACCTCTAAGAAGCTAGCT 199
Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| || | | || |||| |||| || |||||| ||||||| |||||||
Sbjct 200 TCAAAGGAGGCCCTCTGCATAGCTAGTTAGAAGACCGAGGTCTAATTCGTTAACGGAATT 259
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 260 AACCAGACAAATCGCTCCACCAAAAAAGAACGACCATGCACCACCACCGATAGAATCAAG 319
Query 240 AAAGAGCTATCAATCTGTC 258
||||| || ||| ||||||
Sbjct 320 AAAGATCTCTCAGTCTGTC 338
>seq10996
Length=8369
Score = 224 bits (248), Expect = 2e-56
Identities = 205/259 (79%), Gaps = 10/259 (4%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | || ||||| ||||||||| |||| ||||||||||||||| | |||
Sbjct 304 ACTCGTTGAATACATCGGTGTAATGCGCGTGCGTCCCATAACATCTAAGGGCATTATAGA 245
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
| |||||||||||||||||||| | | |||||| | ||||||||| |||||||| ||
Sbjct 244 CGTGTTATTGCCTCAAACTTCCGTGGCTTGGAAGGCTATAGTCCCTTTAAGAAGCTAGTT 185
Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTA-------- 171
| || | | || |||| |||| ||| | |||||||||||||||
Sbjct 184 GCGAAGGAGGTCCCCTGCATAGCTAGTTAGGAGGCTGAGGTCTCGTTCGTTAATTCGTTA 125
Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231
||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 124 TCGGAATTAACTAGACAAATCGCTCCACCAACTAAGAACGGCCATGCAACACCACCCATA 65
Query 232 GAATCAAGAAAGAGCTATC 250
|||| ||||||||||| ||
Sbjct 64 GAATTAAGAAAGAGCTCTC 46
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794424709320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |