Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq171 315 1e-83 seq133569 235 9e-60 seq10996 224 2e-56 >seq171 Length=61800 Score = 315 bits (348), Expect = 1e-83 Identities = 227/261 (87%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55367 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 55426 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | ||||||| | |||||||||||||||||| ||| Sbjct 55427 CCTGTTATTGCCTCAAACTTCCGTGGCCTGGAAGGCCATAGTCCCTCTAAGAAGCTAGCT 55486 Query 122 ACCAACCATAGTCGATGGG----GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 | || | | | | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 55487 GCGAAGGA--GGCCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 55544 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 55545 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 55604 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 55605 AGAAAGAGCTCTCAGTCTGTC 55625 >seq133569 Length=1223 Score = 235 bits (260), Expect = 9e-60 Identities = 208/259 (80%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | || ||||||||||||||||||||| ||||| |||||| |||||||| Sbjct 80 ACTCGTTGAATACATCTGTGTAGCGCGCGTGCGGCCCATAACATTTAAGGGTATCACAGA 139 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||| | | | ||| ||| | ||| | |||||||||||| ||| Sbjct 140 CCTGTTATTGCCTCAAACTTTCGTGGCCTGTAAGGCCATAATACCTCTAAGAAGCTAGCT 199 Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | || | | || |||| |||| || |||||| ||||||| ||||||| Sbjct 200 TCAAAGGAGGCCCTCTGCATAGCTAGTTAGAAGACCGAGGTCTAATTCGTTAACGGAATT 259 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||| Sbjct 260 AACCAGACAAATCGCTCCACCAAAAAAGAACGACCATGCACCACCACCGATAGAATCAAG 319 Query 240 AAAGAGCTATCAATCTGTC 258 ||||| || ||| |||||| Sbjct 320 AAAGATCTCTCAGTCTGTC 338 >seq10996 Length=8369 Score = 224 bits (248), Expect = 2e-56 Identities = 205/259 (79%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | || ||||| ||||||||| |||| ||||||||||||||| | ||| Sbjct 304 ACTCGTTGAATACATCGGTGTAATGCGCGTGCGTCCCATAACATCTAAGGGCATTATAGA 245 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 | |||||||||||||||||||| | | |||||| | ||||||||| |||||||| || Sbjct 244 CGTGTTATTGCCTCAAACTTCCGTGGCTTGGAAGGCTATAGTCCCTTTAAGAAGCTAGTT 185 Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTA-------- 171 | || | | || |||| |||| ||| | ||||||||||||||| Sbjct 184 GCGAAGGAGGTCCCCTGCATAGCTAGTTAGGAGGCTGAGGTCTCGTTCGTTAATTCGTTA 125 Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231 ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 124 TCGGAATTAACTAGACAAATCGCTCCACCAACTAAGAACGGCCATGCAACACCACCCATA 65 Query 232 GAATCAAGAAAGAGCTATC 250 |||| ||||||||||| || Sbjct 64 GAATTAAGAAAGAGCTCTC 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794424709320