Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq171 408 7e-112
seq146118 288 2e-75
seq4368 73.4 7e-11
>seq171
Length=61800
Score = 408 bits (452), Expect = 7e-112
Identities = 267/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | |||||||||| | | | || |||||||||||||||||||||||||||||||
Sbjct 50325 TACTAGGTTGAATTACCATCGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 50383
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 50384 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 50443
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50444 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 50503
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 50504 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 50563
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || ||||||||||| |||||||| |||||| |||| ||||||
Sbjct 50564 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 50616
Score = 109 bits (120), Expect = 9e-22
Identities = 79/90 (88%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | |||||||| | | | | || |||||||||||| ||||||||||||||||||
Sbjct 37781 TACTAGGTTGAATTACCTTCGCGAC-ACTGTCATCAGTAGGATAAAACTAACCTGTCTCA 37839
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||
Sbjct 37840 CGACGGTCTAAACCCAGCTCACGTTCCCTA 37869
>seq146118
Length=1146
Score = 288 bits (318), Expect = 2e-75
Identities = 199/224 (89%), Gaps = 1/224 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | |||||||||| | | | || |||||||||||||||||||||||||||||||
Sbjct 224 TACTATGTTGAATTACCATCGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 166
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||| ||||||||| |||| ||||||||| ||||||||| |||||||| ||| ||
Sbjct 165 CGACGGTATAAACCCAGGTCACCTTCCCTATTGGTGGGTGAAAAATCCAACACTTGGTGA 106
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 105 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATAAAAAAGCAACGTCGCTAT 46
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||||||||||||||||| |||||||| |||||||||| ||||
Sbjct 45 GAACGCTTGGCTGCCACAACCCAGTTATTCCTGTGGTAATTTTT 2
>seq4368
Length=14252
Score = 73.4 bits (80), Expect = 7e-11
Identities = 48/53 (91%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110
||| |||||||||| |||||||||| ||||||||| ||| |||||||||||||
Sbjct 2154 TCACGACGGTCTAAGCCCAGCTCACATTCCCTATTGGTGAGTGAACAATCCAA 2206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 851770840320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |