Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq171 408 7e-112 seq146118 288 2e-75 seq4368 73.4 7e-11 >seq171 Length=61800 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||||| | | | || ||||||||||||||||||||||||||||||| Sbjct 50325 TACTAGGTTGAATTACCATCGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 50383 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 50384 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 50443 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50444 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 50503 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 50504 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 50563 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 50564 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 50616 Score = 109 bits (120), Expect = 9e-22 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||| | | | | || |||||||||||| |||||||||||||||||| Sbjct 37781 TACTAGGTTGAATTACCTTCGCGAC-ACTGTCATCAGTAGGATAAAACTAACCTGTCTCA 37839 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||||||||| Sbjct 37840 CGACGGTCTAAACCCAGCTCACGTTCCCTA 37869 >seq146118 Length=1146 Score = 288 bits (318), Expect = 2e-75 Identities = 199/224 (89%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||||| | | | || ||||||||||||||||||||||||||||||| Sbjct 224 TACTATGTTGAATTACCATCGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 166 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||| ||||||||| |||| ||||||||| ||||||||| |||||||| ||| || Sbjct 165 CGACGGTATAAACCCAGGTCACCTTCCCTATTGGTGGGTGAAAAATCCAACACTTGGTGA 106 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 105 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATAAAAAAGCAACGTCGCTAT 46 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||||||||||||||||| |||||||| |||||||||| |||| Sbjct 45 GAACGCTTGGCTGCCACAACCCAGTTATTCCTGTGGTAATTTTT 2 >seq4368 Length=14252 Score = 73.4 bits (80), Expect = 7e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110 ||| |||||||||| |||||||||| ||||||||| ||| ||||||||||||| Sbjct 2154 TCACGACGGTCTAAGCCCAGCTCACATTCCCTATTGGTGAGTGAACAATCCAA 2206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 851770840320