Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1 223 7e-56 seq2 187 5e-45 >seq1 Length=146306 Score = 223 bits (246), Expect = 7e-56 Identities = 238/309 (77%), Gaps = 18/309 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 104561 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 104503 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 104502 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 104443 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| || | | Sbjct 104442 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 104383 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268 | | || | || ||| | || || || || | || | ||||||||| Sbjct 104382 C--------CTTGGGCGGA--TTCCTCCTTTTGCT-CCTCAG--CCTACGGGGTATTAGC 104336 Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326 |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||| Sbjct 104335 AGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 104278 Query 327 TCCGCCGCT 335 |||||| || Sbjct 104277 TCCGCCACT 104269 Score = 152 bits (168), Expect = 1e-34 Identities = 110/127 (87%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || ||||||| ||| ||| |||||||| |||||| |||||||||||| |||||||| || Sbjct 141150 AAAATTCCCCGCTGTGGCCGCCCGTAGGGGTCTGGGCCGTGTCTCAGTGCCAGTGTGGCT 141209 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||| ||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||||||| Sbjct 141210 GATCCTCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTA 141269 Query 188 GCTAATC 194 ||||||| Sbjct 141270 GCTAATC 141276 >seq2 Length=199390 Score = 187 bits (206), Expect = 5e-45 Identities = 164/201 (82%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 18 CTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCC 77 |||||| ||| ||||| |||| ||||||| ||||| |||||||||||||| ||||||| Sbjct 182155 CTTCTT-CACTCACGCAATATTG-CTGGATCGGGCTTGCGCCCATTGTCCAAGATTCCCC 182212 Query 78 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTC 137 ||||||||| ||||| |||||| || |||||||||||| || ||||| ||| |||||| Sbjct 182213 ACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGTTCATCCGA 182272 Query 138 TCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 ||||||| ||| |||||||||||||| | | ||||||||||||||||||| || Sbjct 182273 AAAGACCAGCTACTGATCGTCGCCTTGGCTACGC---TCCTCACCAACTAGCTAATCAGA 182329 Query 198 CCTAGGCTCATCTGATAGCGC 218 | ||||||||| | ||||| Sbjct 182330 CGCAGGCTCATCAAACAGCGC 182350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068701241600