Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq1 223 7e-56
seq2 187 5e-45
>seq1
Length=146306
Score = 223 bits (246), Expect = 7e-56
Identities = 238/309 (77%), Gaps = 18/309 (6%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 104561 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 104503
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 104502 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 104443
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208
|| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| || | |
Sbjct 104442 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 104383
Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268
| | || | || ||| | || || || || | || | |||||||||
Sbjct 104382 C--------CTTGGGCGGA--TTCCTCCTTTTGCT-CCTCAG--CCTACGGGGTATTAGC 104336
Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326
|||||||| ||| | ||| || ||| ||||| ||| || || |||||||||||
Sbjct 104335 AGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 104278
Query 327 TCCGCCGCT 335
|||||| ||
Sbjct 104277 TCCGCCACT 104269
Score = 152 bits (168), Expect = 1e-34
Identities = 110/127 (87%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127
|| ||||||| ||| ||| |||||||| |||||| |||||||||||| |||||||| ||
Sbjct 141150 AAAATTCCCCGCTGTGGCCGCCCGTAGGGGTCTGGGCCGTGTCTCAGTGCCAGTGTGGCT 141209
Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187
|||| ||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||||||||
Sbjct 141210 GATCCTCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTA 141269
Query 188 GCTAATC 194
|||||||
Sbjct 141270 GCTAATC 141276
>seq2
Length=199390
Score = 187 bits (206), Expect = 5e-45
Identities = 164/201 (82%), Gaps = 5/201 (2%)
Strand=Plus/Plus
Query 18 CTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCC 77
|||||| ||| ||||| |||| ||||||| ||||| |||||||||||||| |||||||
Sbjct 182155 CTTCTT-CACTCACGCAATATTG-CTGGATCGGGCTTGCGCCCATTGTCCAAGATTCCCC 182212
Query 78 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTC 137
||||||||| ||||| |||||| || |||||||||||| || ||||| ||| ||||||
Sbjct 182213 ACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGTTCATCCGA 182272
Query 138 TCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197
||||||| ||| |||||||||||||| | | ||||||||||||||||||| ||
Sbjct 182273 AAAGACCAGCTACTGATCGTCGCCTTGGCTACGC---TCCTCACCAACTAGCTAATCAGA 182329
Query 198 CCTAGGCTCATCTGATAGCGC 218
| ||||||||| | |||||
Sbjct 182330 CGCAGGCTCATCAAACAGCGC 182350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068701241600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |