Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq1 273 8e-71
>seq1
Length=146306
Score = 273 bits (302), Expect = 8e-71
Identities = 347/470 (74%), Gaps = 22/470 (5%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 108966 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 108907
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 108906 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 108847
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 108846 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 108787
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | ||||||| |||||||||||||||||||| || || ||||
Sbjct 108786 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 108734
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| |||| |
Sbjct 108733 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 108680
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
| | | ||| | || |||| || | ||| || | ||||||| || |||||||||
Sbjct 108679 GCTTCCACGGCGCCTC--CTCCCACTGCTTGAGAGCTTACGGTTTCATGTTCTATTTCAC 108622
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| |
Sbjct 108621 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 108562
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 108561 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 108512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1812006881280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |