Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq1 224 2e-56
seq2 136 8e-30
seq9711 80.6 5e-13
>seq1
Length=146306
Score = 224 bits (248), Expect = 2e-56
Identities = 234/305 (77%), Gaps = 18/305 (6%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 104556 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 104497
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 104496 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 104437
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || ||
Sbjct 104436 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 104377
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 104376 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 104333
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 104332 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 104274
Query 300 CCACT 304
|||||
Sbjct 104273 CCACT 104269
Score = 168 bits (186), Expect = 1e-39
Identities = 202/272 (74%), Gaps = 18/272 (7%)
Strand=Plus/Plus
Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCC 93
|| || |||| ||| ||| |||||||| ||||||||||||||||||| ||| ||||||
Sbjct 141150 AAAATTCCCCGCTGTGGCCGCCCGTAGGGGTCTGGGCCGTGTCTCAGTGCCAGTGTGGCT 141209
Query 94 GTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTA 153
| || |||||| | || ||||| |||| ||| |||||| |||||| |||||||||||
Sbjct 141210 GATCCTCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTA 141269
Query 154 CCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCTTTGGTCAAAGAATGATGCCAT 212
|||||| | ||||||||| || || || ||| || || ||| |
Sbjct 141270 GCTAATCAGGCGCGAGCCCCTCCTTGGGCGGATTCCTCCTT------------TTGC--T 141315
Query 213 CCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAG 272
|||| | | || | ||||||||| |||||||| ||| |||| ||| || |||||
Sbjct 141316 CCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAG 141373
Query 273 GTTGCTCACGTGTTACTCACCCGTCCGCCACT 304
||| || ||||| |||||||||||||||||||
Sbjct 141374 GTT-CTTACGTGATACTCACCCGTCCGCCACT 141404
>seq2
Length=199390
Score = 136 bits (150), Expect = 8e-30
Identities = 138/178 (78%), Gaps = 5/178 (3%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || || | |||||||| ||| || ||||||||||||| ||||| ||||||
Sbjct 182176 GCTGGATCGGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 182235
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
|||||||||||||||||| |||||| ||||| || || || ||||| ||||||||
Sbjct 182236 GGGCCGTGTCTCAGTCCCGGTGTGGCTGTTCATCCGAAAAGACCAGCTACTGATCGTCGC 182295
Query 127 CTTGG-TGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCG 183
||||| | ||| ||||||||||| |||||| | ||| || |||| |||||
Sbjct 182296 CTTGGCTACGCT----CCTCACCAACTAGCTAATCAGACGCAGGCTCATCAAACAGCG 182349
>seq9711
Length=9124
Score = 80.6 bits (88), Expect = 5e-13
Identities = 73/91 (80%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| ||| ||| ||| |||||| | || ||||||| |||| ||||||||||
Sbjct 4505 GGCATTGCTCCATTAGGCTTTTGCCCATTACGGAAAATCCCCCCTTGCTACCTCCCGTAG 4564
Query 61 GAGTCTGGGCCGTGTCTCAGTCCC-AATGTG 90
|||||||||||||| |||| ||| ||||||
Sbjct 4565 GAGTCTGGGCCGTGGTTCAGCCCCAAATGTG 4595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 995327723520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |