Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1 224 2e-56 seq2 136 8e-30 seq9711 80.6 5e-13 >seq1 Length=146306 Score = 224 bits (248), Expect = 2e-56 Identities = 234/305 (77%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 104556 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 104497 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 104496 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 104437 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 104436 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 104377 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 104376 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 104333 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 104332 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 104274 Query 300 CCACT 304 ||||| Sbjct 104273 CCACT 104269 Score = 168 bits (186), Expect = 1e-39 Identities = 202/272 (74%), Gaps = 18/272 (7%) Strand=Plus/Plus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCC 93 || || |||| ||| ||| |||||||| ||||||||||||||||||| ||| |||||| Sbjct 141150 AAAATTCCCCGCTGTGGCCGCCCGTAGGGGTCTGGGCCGTGTCTCAGTGCCAGTGTGGCT 141209 Query 94 GTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTA 153 | || |||||| | || ||||| |||| ||| |||||| |||||| ||||||||||| Sbjct 141210 GATCCTCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTA 141269 Query 154 CCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCTTTGGTCAAAGAATGATGCCAT 212 |||||| | ||||||||| || || || ||| || || ||| | Sbjct 141270 GCTAATCAGGCGCGAGCCCCTCCTTGGGCGGATTCCTCCTT------------TTGC--T 141315 Query 213 CCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAG 272 |||| | | || | ||||||||| |||||||| ||| |||| ||| || ||||| Sbjct 141316 CCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAG 141373 Query 273 GTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 ||| || ||||| ||||||||||||||||||| Sbjct 141374 GTT-CTTACGTGATACTCACCCGTCCGCCACT 141404 >seq2 Length=199390 Score = 136 bits (150), Expect = 8e-30 Identities = 138/178 (78%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || || | |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 182176 GCTGGATCGGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 182235 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||||||||||||||| |||||| ||||| || || || ||||| |||||||| Sbjct 182236 GGGCCGTGTCTCAGTCCCGGTGTGGCTGTTCATCCGAAAAGACCAGCTACTGATCGTCGC 182295 Query 127 CTTGG-TGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCG 183 ||||| | ||| ||||||||||| |||||| | ||| || |||| ||||| Sbjct 182296 CTTGGCTACGCT----CCTCACCAACTAGCTAATCAGACGCAGGCTCATCAAACAGCG 182349 >seq9711 Length=9124 Score = 80.6 bits (88), Expect = 5e-13 Identities = 73/91 (80%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||| ||| ||| |||||| | || ||||||| |||| |||||||||| Sbjct 4505 GGCATTGCTCCATTAGGCTTTTGCCCATTACGGAAAATCCCCCCTTGCTACCTCCCGTAG 4564 Query 61 GAGTCTGGGCCGTGTCTCAGTCCC-AATGTG 90 |||||||||||||| |||| ||| |||||| Sbjct 4565 GAGTCTGGGCCGTGGTTCAGCCCCAAATGTG 4595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 995327723520