Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1 208 2e-51 seq133210 109 1e-21 >seq1 Length=146306 Score = 208 bits (230), Expect = 2e-51 Identities = 299/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 109516 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 109457 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 109456 AAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 109397 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCAC-CCGGCAGCTTCACCACT-GAC 175 ||||||| || ||| || |||| ||| || | |||| | |||| || || | | Sbjct 109396 ACATTCTCGCTTCCGCTTCG--TCCATCACCGGCTCGCGCCGGTA-CTTC-CCTCTAGGC 109341 Query 176 ACGACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 ||||||||||||| | ||| | ||||||||||||| ||| |||| | Sbjct 109340 GGAACGCTCCCCTACCGATGTTTTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 109285 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 109284 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 109226 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 109225 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 109166 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 109165 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 109117 >seq133210 Length=1226 Score = 109 bits (120), Expect = 1e-21 Identities = 112/145 (77%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || ||| ||||||||||||||| | || ||| ||||||||||||||||| || ||||| Sbjct 153 CTAGACTAGTGAGCTATTACGCTTTGTTCAAAGAATGGCTGCTTCCAAGCCCACATCCTG 94 Query 319 GTTGTCTACGCAACTC---CACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCT 375 |||||| | |||| ||| |||||| ||||| ||| | |||| || ||| ||| Sbjct 93 GTTGTCATC---ACTCGATCACTTCCTTTTCCACTAAGTTATTTCTTACGGACCTAAGCG 37 Query 376 GATGATCTGGGCTGTTTCCCTCTCG 400 | ||| |||| ||||||||||||| Sbjct 36 TACGATATGGGTTGTTTCCCTCTCG 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173976289280