Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq1 208 2e-51
seq133210 109 1e-21
>seq1
Length=146306
Score = 208 bits (230), Expect = 2e-51
Identities = 299/409 (73%), Gaps = 18/409 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 109516 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 109457
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 109456 AAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 109397
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCAC-CCGGCAGCTTCACCACT-GAC 175
||||||| || ||| || |||| ||| || | |||| | |||| || || | |
Sbjct 109396 ACATTCTCGCTTCCGCTTCG--TCCATCACCGGCTCGCGCCGGTA-CTTC-CCTCTAGGC 109341
Query 176 ACGACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
||||||||||||| | ||| | ||||||||||||| ||| |||| |
Sbjct 109340 GGAACGCTCCCCTACCGATGTTTTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 109285
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 109284 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 109226
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 109225 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 109166
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 109165 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 109117
>seq133210
Length=1226
Score = 109 bits (120), Expect = 1e-21
Identities = 112/145 (77%), Gaps = 6/145 (4%)
Strand=Plus/Minus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318
|| ||| ||||||||||||||| | || ||| ||||||||||||||||| || |||||
Sbjct 153 CTAGACTAGTGAGCTATTACGCTTTGTTCAAAGAATGGCTGCTTCCAAGCCCACATCCTG 94
Query 319 GTTGTCTACGCAACTC---CACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCT 375
|||||| | |||| ||| |||||| ||||| ||| | |||| || ||| |||
Sbjct 93 GTTGTCATC---ACTCGATCACTTCCTTTTCCACTAAGTTATTTCTTACGGACCTAAGCG 37
Query 376 GATGATCTGGGCTGTTTCCCTCTCG 400
| ||| |||| |||||||||||||
Sbjct 36 TACGATATGGGTTGTTTCCCTCTCG 12
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1173976289280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |