Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 2e-27
seq2 116 3e-24
seq1829 77.0 3e-12
>seq1
Length=146306
Score = 127 bits (140), Expect = 2e-27
Identities = 124/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| |||| ||||||| |||||||||
Sbjct 105455 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 105396
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 105395 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 105336
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 105335 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 105296
>seq2
Length=199390
Score = 116 bits (128), Expect = 3e-24
Identities = 123/161 (76%), Gaps = 1/161 (1%)
Strand=Plus/Plus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
|||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| |
Sbjct 180779 TCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACA 180837
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| | || ||| |||| | |||||||| ||||||| |||| |||||||||||||
Sbjct 180838 GCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCA 180897
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| |||||||||||||||||| ||| ||||| || | ||||
Sbjct 180898 TGCGGACTTGACGTCATCCCCTCCTCCCTCCAGTATATCAC 180938
>seq1829
Length=20165
Score = 77.0 bits (84), Expect = 3e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 85 ATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACC 144
|||||| ||||||| |||| ||||||| ||||| ||||||||||||||| ||||
Sbjct 9935 ATTGTAGCACGTGTGTCGCCCAGGGAATAAGGGGCATGATGACTTGACGTCATCCTCACC 9994
Query 145 TTCCTCCGGTTTGTCAC 161
||||||||| || ||||
Sbjct 9995 TTCCTCCGGCTTATCAC 10011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414759888400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |