Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq1 158 2e-36
seq2 136 7e-30
>seq1
Length=146306
Score = 158 bits (174), Expect = 2e-36
Identities = 206/285 (72%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 104902 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 104843
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 104842 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 104783
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | |||||
Sbjct 104782 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 104723
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||| | |||||||||||||||| ||| || |||
Sbjct 104722 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 104663
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 104662 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 104618
>seq2
Length=199390
Score = 136 bits (150), Expect = 7e-30
Identities = 209/293 (71%), Gaps = 14/293 (5%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| |||||||| || ||||||| || |||| | | |||||||| ||| |
Sbjct 181815 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCCT 181874
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| |||| || | || |||||||| ||||||||| |||||| | ||||| |||
Sbjct 181875 TCCTTCGTAGATTTGCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 181934
Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177
|||| || ||||| | ||| || | | || | | | |||||| |||
Sbjct 181935 CCAAGTGAATTGGTTTCGAGAGCATTCCGCCA--GTTTTTGGCGAC---TTTCAC-TCTC 181988
Query 178 AC----TTGCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGC 232
| ||| |||| |||||||| ||||||||| |||| | | |||| | ||| |||||
Sbjct 181989 AACCTATTGACTTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGC 182048
Query 233 CACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
| || ||| |||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 182049 CCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 182101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 826329316120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |