Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1 262 1e-67 seq2 159 8e-37 seq9711 75.2 3e-11 >seq1 Length=146306 Score = 262 bits (290), Expect = 1e-67 Identities = 305/410 (74%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 104587 TTCACGACCCGTGGGCCTTCGACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 104528 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 104527 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 104468 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 104467 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 104408 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 104407 ACTAGCTAATCAGACGCGAGCCCCTCC----TTGGGCGG------ATTCCTCCT-TTTGC 104359 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 104358 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 104301 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 104300 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 104255 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 104254 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 104208 Score = 143 bits (158), Expect = 6e-32 Identities = 201/280 (72%), Gaps = 13/280 (5%) Strand=Plus/Plus Query 57 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 116 ||||| | | | || ||||||| ||| ||| |||||||| |||||| |||||||||||| Sbjct 141138 CGCCCGTCGCGGAAAATTCCCCGCTGTGGCCGCCCGTAGGGGTCTGGGCCGTGTCTCAGT 141197 Query 117 TCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA 176 |||||||||||| || ||||||| ||||||||| |||| |||||| ||| || ||| Sbjct 141198 GCCAGTGTGGCTGATCCTCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTG 141257 Query 177 CCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCC 236 || | |||||||||||||| | | | ||| || | || ||| | Sbjct 141258 CCTCACCAACTAGCTAATCAGGCGCGAGCCCCTCC----TTGGGCGG------ATTCCTC 141307 Query 237 CTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCC 296 || |||| || | | | || | ||||||||| |||||||||| ||| | ||||||| Sbjct 141308 CT-TTTGCTCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCC 141364 Query 297 ATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACT 336 ||||| ||| | ||||||||||||||||||| Sbjct 141365 CAAGGGCAGGTTCTTACGTGATACTCACCCGTCCGCCACT 141404 >seq2 Length=199390 Score = 159 bits (176), Expect = 8e-37 Identities = 142/176 (81%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 |||||||| ||||| || |||| ||| |||||||||||||||| ||| ||||||||| Sbjct 182155 CTTCTTCACTCACGCAATATTGCTGGATCGGGCTTGCGCCCATTGTCCAAGATTCCCCAC 182214 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||||||| ||||| |||||| || |||||||||||| || ||||||||| |||||| Sbjct 182215 TGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGTTCATCCGAAA 182274 Query 141 AGACCAGCTAGGGATCGTCGCCTAGG-TGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||||||| ||||||||||| || | || || | |||||||||||||| Sbjct 182275 AGACCAGCTACTGATCGTCGCCTTGGCTACGC----TCCTCACCAACTAGCTAATC 182326 >seq9711 Length=9124 Score = 75.2 bits (82), Expect = 3e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 35 CGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTA 94 |||||| ||| ||| |||||| ||||||| | || || |||| |||| ||||||||| Sbjct 4504 CGGCATTGCTCCATTAGGCTTTTGCCCATTACGGAAAATCCCCCCTTGCTACCTCCCGTA 4563 Query 95 GGAGTCTGGACCGTGTCTCAG 115 ||||||||| ||||| |||| Sbjct 4564 GGAGTCTGGGCCGTGGTTCAG 4584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1218638430720