Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq1 262 1e-67
seq2 159 8e-37
seq9711 75.2 3e-11
>seq1
Length=146306
Score = 262 bits (290), Expect = 1e-67
Identities = 305/410 (74%), Gaps = 30/410 (7%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| ||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 104587 TTCACGACCCGTGGGCCTTCGACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 104528
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 104527 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 104468
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | |||
Sbjct 104467 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 104408
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| | | | | ||| || | || ||| ||| ||||
Sbjct 104407 ACTAGCTAATCAGACGCGAGCCCCTCC----TTGGGCGG------ATTCCTCCT-TTTGC 104359
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | | || | ||||||||| |||||||||| ||| | ||||||| ||||
Sbjct 104358 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 104301
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
| ||| | | |||||||||||||||||||| ||| || || ||||
Sbjct 104300 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 104255
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||| |||||||||||||||| || ||||||||||||||| |||||
Sbjct 104254 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 104208
Score = 143 bits (158), Expect = 6e-32
Identities = 201/280 (72%), Gaps = 13/280 (5%)
Strand=Plus/Plus
Query 57 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 116
||||| | | | || ||||||| ||| ||| |||||||| |||||| ||||||||||||
Sbjct 141138 CGCCCGTCGCGGAAAATTCCCCGCTGTGGCCGCCCGTAGGGGTCTGGGCCGTGTCTCAGT 141197
Query 117 TCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA 176
|||||||||||| || ||||||| ||||||||| |||| |||||| ||| || |||
Sbjct 141198 GCCAGTGTGGCTGATCCTCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTG 141257
Query 177 CCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCC 236
|| | |||||||||||||| | | | ||| || | || ||| |
Sbjct 141258 CCTCACCAACTAGCTAATCAGGCGCGAGCCCCTCC----TTGGGCGG------ATTCCTC 141307
Query 237 CTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCC 296
|| |||| || | | | || | ||||||||| |||||||||| ||| | |||||||
Sbjct 141308 CT-TTTGCTCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCC 141364
Query 297 ATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACT 336
||||| ||| | |||||||||||||||||||
Sbjct 141365 CAAGGGCAGGTTCTTACGTGATACTCACCCGTCCGCCACT 141404
>seq2
Length=199390
Score = 159 bits (176), Expect = 8e-37
Identities = 142/176 (81%), Gaps = 5/176 (3%)
Strand=Plus/Plus
Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80
|||||||| ||||| || |||| ||| |||||||||||||||| ||| |||||||||
Sbjct 182155 CTTCTTCACTCACGCAATATTGCTGGATCGGGCTTGCGCCCATTGTCCAAGATTCCCCAC 182214
Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140
||||||| ||||| |||||| || |||||||||||| || ||||||||| ||||||
Sbjct 182215 TGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGTTCATCCGAAA 182274
Query 141 AGACCAGCTAGGGATCGTCGCCTAGG-TGGGCCATTACCCCGCCAACTAGCTAATC 195
|||||||||| ||||||||||| || | || || | ||||||||||||||
Sbjct 182275 AGACCAGCTACTGATCGTCGCCTTGGCTACGC----TCCTCACCAACTAGCTAATC 182326
>seq9711
Length=9124
Score = 75.2 bits (82), Expect = 3e-11
Identities = 65/81 (80%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 35 CGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTA 94
|||||| ||| ||| |||||| ||||||| | || || |||| |||| |||||||||
Sbjct 4504 CGGCATTGCTCCATTAGGCTTTTGCCCATTACGGAAAATCCCCCCTTGCTACCTCCCGTA 4563
Query 95 GGAGTCTGGACCGTGTCTCAG 115
||||||||| ||||| ||||
Sbjct 4564 GGAGTCTGGGCCGTGGTTCAG 4584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1218638430720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |