Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1 324 4e-86 seq2 259 1e-66 seq9711 82.4 2e-13 >seq1 Length=146306 Score = 324 bits (358), Expect = 4e-86 Identities = 279/343 (81%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 104390 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 104449 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 104450 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 104509 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 104510 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTCGA 104569 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 104570 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 104629 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 104630 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 104689 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 104690 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 104731 Score = 140 bits (154), Expect = 1e-30 Identities = 118/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| ||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 141283 CGCGCCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 141224 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| |||| |||||| ||| |||||||||||| ||| || |||||||| ||| Sbjct 141223 CCGAGAGGAGGATCAGCCACACTGGCACTGAGACACGGCCCAGACCCCTACGGGCGGCCA 141164 Query 280 CAGTGGGGAATATTGCACAATGGGC 304 ||| ||||||| || | | | |||| Sbjct 141163 CAGCGGGGAATTTTCCGCGACGGGC 141139 >seq2 Length=199390 Score = 259 bits (286), Expect = 1e-66 Identities = 263/337 (78%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 || ||||||||||||||||||||| ||| | || | |||||||||||||||||||| | Sbjct 182335 CCTGCGTCTGATTAGCTAGTTGGTGAGG-AGCG--TAGCCAAGGCGACGATCAGTAGCTG 182279 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 || || ||| | |||||| || |||||||||||| || ||||| ||||| ||| Sbjct 182278 GTCTTTTCGGATGAACAGCCACACCGGGACTGAGACACGGCCCGGACTCCCACGGGGGGC 182219 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||| ||| ||||||||| ||||| ||| |||||| ||||||| || Sbjct 182218 AGCAGTGGGGAATCTTGGACAATGGGCGCAAGCCCGATCCAGCAATATTGCGTGAGTGAA 182159 Query 338 GA--AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAG 393 || || | | | | |||||||||| || | | | ||| ||||| | ||| ||| Sbjct 182158 GAAGAGTAATGCCGCTTGTAAAGCTCTTTCGTTGAGTGCGCGATCATGACAGGACTCGAG 182099 Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 453 || |||||||||||||||| |||||||||||||||||||| ||| |||||| || ||| Sbjct 182098 GAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTC 182039 Query 454 TCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 | |||||| ||| |||||||||||| |||||| ||| Sbjct 182038 TTCGGAATGACT-GGGCGTAAAGGGCACGTAGGCGGT 182003 >seq9711 Length=9124 Score = 82.4 bits (90), Expect = 2e-13 Identities = 74/92 (80%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 237 CACATT-GGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGC 295 |||||| || |||| ||||| ||| |||||||||||||| |||| |||| || || | Sbjct 4595 CACATTTGGGGCTGAACCACGGCCCAGACTCCTACGGGAGGTAGCAAGGGGGGATTTTCC 4536 Query 296 ACAATGGGCAAAAGCCTGATGCAGCAACGCCG 327 ||||||||||||||| ||| ||||| |||| Sbjct 4535 GTAATGGGCAAAAGCCTAATGGAGCAATGCCG 4504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1492991585280