Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq1 324 4e-86
seq2 259 1e-66
seq9711 82.4 2e-13
>seq1
Length=146306
Score = 324 bits (358), Expect = 4e-86
Identities = 279/343 (81%), Gaps = 3/343 (1%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 104390 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 104449
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 104450 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 104509
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||
Sbjct 104510 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTCGA 104569
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397
||||| |||||||| || ||| | | | ||||| |||||||||| || |||
Sbjct 104570 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 104629
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| ||||||||| ||||||||||||||||||| || ||| || |||||||||||
Sbjct 104630 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 104689
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||| | | |||||||||| || |||||||| || |||||||
Sbjct 104690 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 104731
Score = 140 bits (154), Expect = 1e-30
Identities = 118/145 (81%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||| ||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 141283 CGCGCCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 141224
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| |||| |||||| ||| |||||||||||| ||| || |||||||| |||
Sbjct 141223 CCGAGAGGAGGATCAGCCACACTGGCACTGAGACACGGCCCAGACCCCTACGGGCGGCCA 141164
Query 280 CAGTGGGGAATATTGCACAATGGGC 304
||| ||||||| || | | | ||||
Sbjct 141163 CAGCGGGGAATTTTCCGCGACGGGC 141139
>seq2
Length=199390
Score = 259 bits (286), Expect = 1e-66
Identities = 263/337 (78%), Gaps = 8/337 (2%)
Strand=Plus/Minus
Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217
|| ||||||||||||||||||||| ||| | || | |||||||||||||||||||| |
Sbjct 182335 CCTGCGTCTGATTAGCTAGTTGGTGAGG-AGCG--TAGCCAAGGCGACGATCAGTAGCTG 182279
Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277
|| || ||| | |||||| || |||||||||||| || ||||| ||||| |||
Sbjct 182278 GTCTTTTCGGATGAACAGCCACACCGGGACTGAGACACGGCCCGGACTCCCACGGGGGGC 182219
Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337
||||||||||||| ||| ||||||||| ||||| ||| |||||| ||||||| ||
Sbjct 182218 AGCAGTGGGGAATCTTGGACAATGGGCGCAAGCCCGATCCAGCAATATTGCGTGAGTGAA 182159
Query 338 GA--AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAG 393
|| || | | | | |||||||||| || | | | ||| ||||| | ||| |||
Sbjct 182158 GAAGAGTAATGCCGCTTGTAAAGCTCTTTCGTTGAGTGCGCGATCATGACAGGACTCGAG 182099
Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 453
|| |||||||||||||||| |||||||||||||||||||| ||| |||||| || |||
Sbjct 182098 GAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTC 182039
Query 454 TCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490
| |||||| ||| |||||||||||| |||||| |||
Sbjct 182038 TTCGGAATGACT-GGGCGTAAAGGGCACGTAGGCGGT 182003
>seq9711
Length=9124
Score = 82.4 bits (90), Expect = 2e-13
Identities = 74/92 (80%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 237 CACATT-GGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGC 295
|||||| || |||| ||||| ||| |||||||||||||| |||| |||| || || |
Sbjct 4595 CACATTTGGGGCTGAACCACGGCCCAGACTCCTACGGGAGGTAGCAAGGGGGGATTTTCC 4536
Query 296 ACAATGGGCAAAAGCCTGATGCAGCAACGCCG 327
||||||||||||||| ||| ||||| ||||
Sbjct 4535 GTAATGGGCAAAAGCCTAATGGAGCAATGCCG 4504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1492991585280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |