Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1 273 5e-71 seq2 210 5e-52 >seq1 Length=146306 Score = 273 bits (302), Expect = 5e-71 Identities = 305/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 104622 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 104681 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 104682 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 104741 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 104742 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 104801 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 104802 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 104861 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 104862 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 104921 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 104922 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 104980 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| | ||| |||||| ||||||| || ||||||||||| Sbjct 104981 GTGCAGTGTTGTAGCTAACGCATTAAGTATCCCGCCTGGGGAGTA 105025 >seq2 Length=199390 Score = 210 bits (232), Expect = 5e-52 Identities = 258/348 (74%), Gaps = 22/348 (6%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 182105 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 182046 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCA------ 115 || ||| | |||||| ||||||||||||||| |||||| ||| |||||| Sbjct 182045 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTG----AAGTCAATAGGT 181990 Query 116 -GAG-GTGAAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAG 169 ||| ||||||| | | | || | | ||| |||| | ||||| | || || | Sbjct 181989 TGAGAGTGAAAGTC---GCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTG 181936 Query 170 AGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGG 229 ||| || || ||||||||| | |||||| |||||||| || | || | | ||| Sbjct 181935 GGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGCAAATCTACGAAGG 181876 Query 230 AACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGG 289 || ||| |||||||| ||| |||| || ||| ||| || ||||||| ||| Sbjct 181875 AAGGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGG 181816 Query 290 GGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 181815 GGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 181768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199497512960