Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq171 315 1e-83 seq133569 183 6e-44 seq106682 159 7e-37 seq10996 156 8e-36 >seq171 Length=61800 Score = 315 bits (348), Expect = 1e-83 Identities = 261/316 (83%), Gaps = 12/316 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC------CCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || || | || || | | || | Sbjct 55534 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGGCCTCCTTCGCAGCTAGC----T 55479 Query 74 TCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | || | || | | |||||||||||||||||||||||||||||| Sbjct 55478 TCTTAGAGGGACTATGGCCTTCCAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGAT 55419 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | |||||||| || ||| Sbjct 55418 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAACC 55359 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 55358 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 55300 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 55299 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 55240 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 55239 GTCCCTGCCCTTTGTA 55224 Score = 73.4 bits (80), Expect = 7e-11 Identities = 45/48 (94%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct 40257 GTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 40210 >seq133569 Length=1223 Score = 183 bits (202), Expect = 6e-44 Identities = 159/195 (82%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| | ||| | || | || | | | ||||||||||||||||||||||||| Sbjct 194 GCTTCTTAGAGGTATTATGGCCTTACAGGCCACGAAAGTTTGAGGCAATAACAGGTCTGT 135 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||| |||||| ||||| ||||||||||||||||||||| || | |||||||| || Sbjct 134 GATACCCTTAAATGTTATGGGCCGCACGCGCGCTACACAGATGTATTCAACGAGTCTATA 75 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||| Sbjct 74 ACCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATT 16 Query 250 GCAATTATTGCTCTT 264 |||||| ||| |||| Sbjct 15 GCAATTGTTGGTCTT 1 >seq106682 Length=1441 Score = 159 bits (176), Expect = 7e-37 Identities = 155/198 (78%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||| |||||| |||||| | | |||||||| || Sbjct 1111 ATGCCCTTAGATGTTCTGGGCCATACGCGCATTACACTAATGTATTCAACGAGTCTATAT 1052 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||||| || ||| | |||||||||| | ||| | | ||||| |||||||| | ||||| Sbjct 1051 CCTTGGTCGACAGGCCCGGGTAATCTT-TGAAATTTTATCGTGATGGGGATAAATCATTG 993 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||| |||||| |||| || |||| |||||||| || |||| | Sbjct 992 CAATTGTTGGCCTTCAACAAGGAATTTCTAGGAAACGCGATTCATCAGCTTGCATTGACT 933 Query 311 ACGTCCCTGCCCTTTGTA 328 | ||||||||||||| || Sbjct 932 ATGTCCCTGCCCTTTATA 915 >seq10996 Length=8369 Score = 156 bits (172), Expect = 8e-36 Identities = 152/191 (80%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||| ||||||||| | || |||||| | |||||||||||||||||||| |||| Sbjct 190 GCTTCTTAAAGGGACTATAGCCTTCCAAGCC-ACGGAAGTTTGAGGCAATAACACGTCTA 248 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 | ||||||||||||||| |||| ||||||||| ||||| || | |||||||| || Sbjct 249 TAATGCCCTTAGATGTTATGGGACGCACGCGCATTACACCGATGTATTCAACGAGTCTAT 308 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||||||| | | | |||||||||| | | | | ||||| | |||||||| ||| Sbjct 309 AACCTTGGCCGACAAGCCCGGGTAATCTT-TGATATTTCATCGTGAT-GGGATAGATCAT 366 Query 249 TGCAATTATTG 259 ||||||| ||| Sbjct 367 TGCAATTGTTG 377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944285276160