Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq171 315 1e-83
seq133569 183 6e-44
seq106682 159 7e-37
seq10996 156 8e-36
>seq171
Length=61800
Score = 315 bits (348), Expect = 1e-83
Identities = 261/316 (83%), Gaps = 12/316 (4%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC------CCGCTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | || || | || || | | || |
Sbjct 55534 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGGCCTCCTTCGCAGCTAGC----T 55479
Query 74 TCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132
||||||||||||||| | || | || | | ||||||||||||||||||||||||||||||
Sbjct 55478 TCTTAGAGGGACTATGGCCTTCCAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGAT 55419
Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192
|||||||||||||||||||||||||||||||||||||| | |||||||| || |||
Sbjct 55418 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAACC 55359
Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252
||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||
Sbjct 55358 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 55300
Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312
||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||
Sbjct 55299 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 55240
Query 313 GTCCCTGCCCTTTGTA 328
||||||||||||||||
Sbjct 55239 GTCCCTGCCCTTTGTA 55224
Score = 73.4 bits (80), Expect = 7e-11
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||||||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 40257 GTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 40210
>seq133569
Length=1223
Score = 183 bits (202), Expect = 6e-44
Identities = 159/195 (82%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||| | ||| | || | || | | | |||||||||||||||||||||||||
Sbjct 194 GCTTCTTAGAGGTATTATGGCCTTACAGGCCACGAAAGTTTGAGGCAATAACAGGTCTGT 135
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||| |||||| ||||| ||||||||||||||||||||| || | |||||||| ||
Sbjct 134 GATACCCTTAAATGTTATGGGCCGCACGCGCGCTACACAGATGTATTCAACGAGTCTATA 75
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
|||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||
Sbjct 74 ACCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATT 16
Query 250 GCAATTATTGCTCTT 264
|||||| ||| ||||
Sbjct 15 GCAATTGTTGGTCTT 1
>seq106682
Length=1441
Score = 159 bits (176), Expect = 7e-37
Identities = 155/198 (78%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||||||||||| |||||| |||||| | | |||||||| ||
Sbjct 1111 ATGCCCTTAGATGTTCTGGGCCATACGCGCATTACACTAATGTATTCAACGAGTCTATAT 1052
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|||||| || ||| | |||||||||| | ||| | | ||||| |||||||| | |||||
Sbjct 1051 CCTTGGTCGACAGGCCCGGGTAATCTT-TGAAATTTTATCGTGATGGGGATAAATCATTG 993
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||| ||| ||||||| |||||| |||| || |||| |||||||| || |||| |
Sbjct 992 CAATTGTTGGCCTTCAACAAGGAATTTCTAGGAAACGCGATTCATCAGCTTGCATTGACT 933
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||| ||
Sbjct 932 ATGTCCCTGCCCTTTATA 915
>seq10996
Length=8369
Score = 156 bits (172), Expect = 8e-36
Identities = 152/191 (80%), Gaps = 5/191 (3%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGCT--CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128
|||||||| ||||||||| | || |||||| | |||||||||||||||||||| ||||
Sbjct 190 GCTTCTTAAAGGGACTATAGCCTTCCAAGCC-ACGGAAGTTTGAGGCAATAACACGTCTA 248
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188
| ||||||||||||||| |||| ||||||||| ||||| || | |||||||| ||
Sbjct 249 TAATGCCCTTAGATGTTATGGGACGCACGCGCATTACACCGATGTATTCAACGAGTCTAT 308
Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248
|||||||||| | | | |||||||||| | | | | ||||| | |||||||| |||
Sbjct 309 AACCTTGGCCGACAAGCCCGGGTAATCTT-TGATATTTCATCGTGAT-GGGATAGATCAT 366
Query 249 TGCAATTATTG 259
||||||| |||
Sbjct 367 TGCAATTGTTG 377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944285276160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |