Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1 127 4e-27 >seq1 Length=146306 Score = 127 bits (140), Expect = 4e-27 Identities = 178/245 (73%), Gaps = 11/245 (4%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| | || ||| ||||| |||| || ||| | ||| || Sbjct 108133 ATGGTGGATACCTAGGCACCCAGAGACGAAGAAGGGCGTATTAATCGACGAAATGCTTCG 108192 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 108193 GGGAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCG 108245 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| | Sbjct 108246 AAC--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 108302 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 |||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| Sbjct 108303 CTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAAC 108362 Query 247 AGCCT 251 ||||| Sbjct 108363 AGCCT 108367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915573899520