Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq171 711 0.0 seq8681 275 2e-71 seq166268 214 6e-53 seq224066 127 7e-27 seq10594 104 8e-20 >seq171 Length=61800 Score = 711 bits (788), Expect = 0.0 Identities = 479/531 (90%), Gaps = 7/531 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 50650 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 50709 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 50710 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 50769 Query 127 GGCCCGCGAA-GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 ||||||| | |||||||| | | ||| | || | ||| || ||||| |||| Sbjct 50770 GGCCCGCAAGCGGACCTTAGGTCTAAAAAGAGGGGCTGTGCC--CCGCTTCCGATTCACG 50827 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||| |||| ||| ||||||||||||||||| |||||| ||||||||| Sbjct 50828 GAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTTGCCGAA---GCTCCCACT 50884 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50885 TATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 50944 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 50945 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGA 51004 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51005 CAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 51064 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51065 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 51124 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 51125 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 51175 Score = 176 bits (194), Expect = 1e-41 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26680 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 26739 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||| | |||| Sbjct 26740 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 26781 >seq8681 Length=19449 Score = 275 bits (304), Expect = 2e-71 Identities = 276/353 (78%), Gaps = 18/353 (5%) Strand=Plus/Minus Query 190 AGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTC 249 ||||||| |||| |||| || |||||||| || ||||| ||||||||| Sbjct 10771 AGTAAAATAACGTTAAGAGTT------TTTCACTTTTGCTGAAACT----CCACTTATTG 10722 Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 |||| || | ||||| ||||||||||||||| ||||||||||||||||| ||| |||||| Sbjct 10721 TACAACTTTTAAGTCGTTTCACAAAGTCGGAGTAGAGTCAAGCTCAACACGGTTTTCTTT 10662 Query 310 CCCCGCTGATTCCGCCAAGCCCGTTC-CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368 ||| || ||| ||||||| || | | |||| ||||||| ||| ||||||||| | | Sbjct 10661 GCCCACTAATTATGCCAAGCGTGTCCTCTTTGGTCGTGGTTTTGCTGGATAGTAGACATG 10602 Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 |||| | |||||||||||||||||||| ||||||||| || |||||||| | ||| | Sbjct 10601 GACACCGTGAATCTCGTTAATCCATTCAAGCGCGTCACCAAATAGATGAC-AAGCAACTA 10543 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT----GGTTGA-ATT 483 ||| ||||||||||||||||||||| | |||||| ||||||| |||| | || Sbjct 10542 ACTATACTAAGAGAGTCATAGTTACTCCGGATGTTTACTCGCGCTTAATGGGTTAATTTT 10483 Query 484 TCTTCAC-TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 | ||||| ||||||||||| || ||| | |||| |||||||||||| | |||| Sbjct 10482 TTTTCACTTTTGACATTCAAAGTACTAGTCAGATATCACATTGCGTTAGCATC 10430 >seq166268 Length=1046 Score = 214 bits (236), Expect = 6e-53 Identities = 124/128 (97%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 919 TAGACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 978 Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 979 CCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGG 1038 Query 370 ACAGTGGG 377 |||||||| Sbjct 1039 ACAGTGGG 1046 >seq224066 Length=813 Score = 127 bits (140), Expect = 7e-27 Identities = 95/111 (86%), Gaps = 4/111 (4%) Strand=Plus/Minus Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||| |||||||||||||||| ||||||| ||||||||||||| | || || Sbjct 813 TTTGGCTATCTTAAGAGAGTCATAGATACTCCCACCGTTTACCCGCGATCA----AAATT 758 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||| |||| ||| || |||||||||||||| |||||| Sbjct 757 CTTCACTTTGACATTCAAAGCAATGGACATAAATCACATTGCGTTAACATC 707 >seq10594 Length=7444 Score = 104 bits (114), Expect = 8e-20 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||| |||||| Sbjct 4493 CTTTTGCTCTACGCGAGGTTTCTGTCCTCACTGAGCTGGTCTTAGGACACCTACGTTATT 4434 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| | |||||| ||||||||| |||||||||| ||||| |||||| || Sbjct 4433 CTTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCCTGATAATGTCCTC 4384 Score = 93.3 bits (102), Expect = 1e-16 Identities = 97/126 (77%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-CGGCTCCCAC 243 || |||||| || |||||| | |||||||||||||| || | || | ||||||| Sbjct 4201 GAGTAAGTACAACAACGATGAAAGTAGTGGTATTTCAACGTCGGTGCAAGCACCTCCCAC 4142 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| |||| ||||||| ||| || |||| || ||| |||||| |||||||||||| Sbjct 4141 TTATGCTACGCCTCTCATGTCGTTATACAATATCAAGCTAAAGTCAAACTCAACAGGGTC 4082 Query 304 TTCTTT 309 |||||| Sbjct 4081 TTCTTT 4076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1630168162560