Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq171 711 0.0
seq8681 275 2e-71
seq166268 214 6e-53
seq224066 127 7e-27
seq10594 104 8e-20
>seq171
Length=61800
Score = 711 bits (788), Expect = 0.0
Identities = 479/531 (90%), Gaps = 7/531 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| || || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 50650 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 50709
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 50710 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 50769
Query 127 GGCCCGCGAA-GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCATT 184
||||||| | |||||||| | | ||| | || | ||| || ||||| ||||
Sbjct 50770 GGCCCGCAAGCGGACCTTAGGTCTAAAAAGAGGGGCTGTGCC--CCGCTTCCGATTCACG 50827
Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244
|| ||||||||| |||| ||| ||||||||||||||||| |||||| |||||||||
Sbjct 50828 GAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTTGCCGAA---GCTCCCACT 50884
Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50885 TATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 50944
Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 50945 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGA 51004
Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51005 CAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 51064
Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51065 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 51124
Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 51125 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 51175
Score = 176 bits (194), Expect = 1e-41
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26680 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 26739
Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||||||||||||||||||||||||||| | ||||
Sbjct 26740 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 26781
>seq8681
Length=19449
Score = 275 bits (304), Expect = 2e-71
Identities = 276/353 (78%), Gaps = 18/353 (5%)
Strand=Plus/Minus
Query 190 AGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTC 249
||||||| |||| |||| || |||||||| || ||||| |||||||||
Sbjct 10771 AGTAAAATAACGTTAAGAGTT------TTTCACTTTTGCTGAAACT----CCACTTATTG 10722
Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309
|||| || | ||||| ||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 10721 TACAACTTTTAAGTCGTTTCACAAAGTCGGAGTAGAGTCAAGCTCAACACGGTTTTCTTT 10662
Query 310 CCCCGCTGATTCCGCCAAGCCCGTTC-CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368
||| || ||| ||||||| || | | |||| ||||||| ||| ||||||||| | |
Sbjct 10661 GCCCACTAATTATGCCAAGCGTGTCCTCTTTGGTCGTGGTTTTGCTGGATAGTAGACATG 10602
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428
|||| | |||||||||||||||||||| ||||||||| || |||||||| | ||| |
Sbjct 10601 GACACCGTGAATCTCGTTAATCCATTCAAGCGCGTCACCAAATAGATGAC-AAGCAACTA 10543
Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT----GGTTGA-ATT 483
||| ||||||||||||||||||||| | |||||| ||||||| |||| | ||
Sbjct 10542 ACTATACTAAGAGAGTCATAGTTACTCCGGATGTTTACTCGCGCTTAATGGGTTAATTTT 10483
Query 484 TCTTCAC-TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
| ||||| ||||||||||| || ||| | |||| |||||||||||| | ||||
Sbjct 10482 TTTTCACTTTTGACATTCAAAGTACTAGTCAGATATCACATTGCGTTAGCATC 10430
>seq166268
Length=1046
Score = 214 bits (236), Expect = 6e-53
Identities = 124/128 (97%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 TAGACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 978
Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 979 CCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGG 1038
Query 370 ACAGTGGG 377
||||||||
Sbjct 1039 ACAGTGGG 1046
>seq224066
Length=813
Score = 127 bits (140), Expect = 7e-27
Identities = 95/111 (86%), Gaps = 4/111 (4%)
Strand=Plus/Minus
Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484
|||||||| |||||||||||||||| ||||||| ||||||||||||| | || ||
Sbjct 813 TTTGGCTATCTTAAGAGAGTCATAGATACTCCCACCGTTTACCCGCGATCA----AAATT 758
Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||||||||| |||| ||| || |||||||||||||| ||||||
Sbjct 757 CTTCACTTTGACATTCAAAGCAATGGACATAAATCACATTGCGTTAACATC 707
>seq10594
Length=7444
Score = 104 bits (114), Expect = 8e-20
Identities = 89/110 (81%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| ||| ||||||| ||| |||| |||||||||||| ||||||
Sbjct 4493 CTTTTGCTCTACGCGAGGTTTCTGTCCTCACTGAGCTGGTCTTAGGACACCTACGTTATT 4434
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116
||| | |||||| ||||||||| |||||||||| ||||| |||||| ||
Sbjct 4433 CTTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCCTGATAATGTCCTC 4384
Score = 93.3 bits (102), Expect = 1e-16
Identities = 97/126 (77%), Gaps = 1/126 (1%)
Strand=Plus/Minus
Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-CGGCTCCCAC 243
|| |||||| || |||||| | |||||||||||||| || | || | |||||||
Sbjct 4201 GAGTAAGTACAACAACGATGAAAGTAGTGGTATTTCAACGTCGGTGCAAGCACCTCCCAC 4142
Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303
|||| |||| ||||||| ||| || |||| || ||| |||||| ||||||||||||
Sbjct 4141 TTATGCTACGCCTCTCATGTCGTTATACAATATCAAGCTAAAGTCAAACTCAACAGGGTC 4082
Query 304 TTCTTT 309
||||||
Sbjct 4081 TTCTTT 4076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1630168162560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |