Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 5e-26
seq2 89.7 1e-15
>seq1
Length=146306
Score = 123 bits (136), Expect = 5e-26
Identities = 194/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 104658 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 104610
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| || | |||| | ||||| ||| |||||
Sbjct 104609 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCGACCTCCACGC 104557
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 104556 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 104497
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 104496 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 104437
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 104436 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 104398
>seq2
Length=199390
Score = 89.7 bits (98), Expect = 1e-15
Identities = 99/131 (76%), Gaps = 1/131 (1%)
Strand=Plus/Plus
Query 82 AAAGAAGTTTACAATCCGTAGAAC-CTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
||||| ||||||| | | | || |||| || |||||| | | ||||| || | ||
Sbjct 182130 AAAGAGCTTTACAAGCGGCATTACTCTTCTTCACTCACGCAATATTGCTGGATCGGGCTT 182189
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
|| |||||| |||| ||||| |||||||||| ||||| ||||| || |||||||||||
Sbjct 182190 GCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 182249
Query 201 TTCCAATGTGG 211
| || |||||
Sbjct 182250 TCCCGGTGTGG 182260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1065511088640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |