Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq171 116 6e-24
seq146118 98.7 2e-18
>seq171
Length=61800
Score = 116 bits (128), Expect = 6e-24
Identities = 101/123 (82%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 37783 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 37726
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | |||||||||||| |||||||||||||||||||||||| ||||
Sbjct 37725 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCA 37666
Query 121 GAA 123
|||
Sbjct 37665 GAA 37663
Score = 116 bits (128), Expect = 6e-24
Identities = 101/123 (82%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 50327 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 50270
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | |||||||||||| |||||||||||||||||||||||| ||||
Sbjct 50269 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCA 50210
Query 121 GAA 123
|||
Sbjct 50209 GAA 50207
>seq146118
Length=1146
Score = 98.7 bits (108), Expect = 2e-18
Identities = 97/123 (79%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||| || || |||| | ||||||| | | | || ||| || ||||
Sbjct 222 GTACGAGAGGAATCGTTGA-TTCACAC-AATTGGTCATCGTGCTTGGTTGAAAAGCCAGT 279
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| || ||||||||| | |||||||||||| || ||||||||||||||||||||| ||||
Sbjct 280 GGCGTGAAGCTACCGTGTGCTGGATTATGACTAAACGCCTCTAAGTCAGAATCCGGGCCA 339
Query 121 GAA 123
|||
Sbjct 340 GAA 342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 816757934080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |