Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq171 116 6e-24 seq146118 98.7 2e-18 >seq171 Length=61800 Score = 116 bits (128), Expect = 6e-24 Identities = 101/123 (82%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 37783 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 37726 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| |||||||||||||||||||||||| |||| Sbjct 37725 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCA 37666 Query 121 GAA 123 ||| Sbjct 37665 GAA 37663 Score = 116 bits (128), Expect = 6e-24 Identities = 101/123 (82%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 50327 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 50270 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| |||||||||||||||||||||||| |||| Sbjct 50269 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCA 50210 Query 121 GAA 123 ||| Sbjct 50209 GAA 50207 >seq146118 Length=1146 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| || || |||| | ||||||| | | | || ||| || |||| Sbjct 222 GTACGAGAGGAATCGTTGA-TTCACAC-AATTGGTCATCGTGCTTGGTTGAAAAGCCAGT 279 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || ||||||||| | |||||||||||| || ||||||||||||||||||||| |||| Sbjct 280 GGCGTGAAGCTACCGTGTGCTGGATTATGACTAAACGCCTCTAAGTCAGAATCCGGGCCA 339 Query 121 GAA 123 ||| Sbjct 340 GAA 342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 816757934080