Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq171 609 7e-172 seq23443 181 3e-43 seq229483 170 6e-40 seq170638 170 6e-40 seq124611 105 2e-20 seq11221 89.7 2e-15 seq39179 82.4 2e-13 >seq171 Length=61800 Score = 609 bits (674), Expect = 7e-172 Identities = 448/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| ||||| |||| |||||||||||||||||| Sbjct 56288 GTACTCATTCCAATTACCAGACTTAAAA-AGCCCGGTATTGTTATTTATTGTCACTACCT 56346 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 56347 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 56406 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 56407 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 56466 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 56467 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCG 56526 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GG 293 | |||||| |||||| ||| |||||| |||||||| || |||| || ||| | Sbjct 56527 CAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAAAGCCCG 56584 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||||| ||||||||||||||| || ||||||| ||||||||| | | ||| ||||| Sbjct 56585 CGTTGACCTTTTATCTAATAAATGCAGCCCTTCCAGAAGTCGGGCGATGTTGCACGTATT 56644 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| |||||| |||||| |||| |||||||| Sbjct 56645 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CAGGTACCATCAAACAAACTATAACTGA 56703 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 56704 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 56763 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 56764 TAATCTTTGAGACAAGCATATGACTACTGGCAG 56796 >seq23443 Length=4826 Score = 181 bits (200), Expect = 3e-43 Identities = 215/287 (75%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||||||| |||| ||| |||||||||||||||| |||| ||||| ||||||||||| Sbjct 4531 TCAGGCTTCCTCCCCGAAATCGAACCCTAATTCTCCGTCCCCCGTCACCACCATGGTAGG 4590 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC- 241 |||||||||||||||||||||||| ||||||||||||||||||| || |||||| | | Sbjct 4591 CCACTATCCTACCATCGAAAGTTGTCAGGGCAGAAATTTGAATGATCCGTCGCCGCCGCA 4650 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCA----CCAAGGAGCCCCGAAGGGCGTT 297 |||||| |||||| ||| | ||| |||||||| | || | | | ||||| Sbjct 4651 AAGGCCGTGCGATCCGTCGCGATATCATGAATCATCTGTCCAGCGGTCACAGCCCGCGTT 4710 Query 298 GGTTTTTTATCTAATAAAT-ACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCT 356 ||||||| || || | ||||| ||| | ||||||| | | | || |||||| Sbjct 4711 TACCTTTTATCGAAAAATTCCCACCCTTTCAGCAGTCGGGCGATGTTTCCCGTTTTAGCT 4770 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 |||| ||||| ||| |||||| ||| |||||| | ||| |||| Sbjct 4771 CTAGTATTACTACGCTTATCCGAATAG-CAGGTACCAGCAACGAAAC 4816 >seq229483 Length=795 Score = 170 bits (188), Expect = 6e-40 Identities = 136/161 (84%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 || ||||||||||||||| ||| |||||||||| |||| ||| ||| |||||| |||| Sbjct 358 CACGTATTAGCTCTAGAAATACTACGGTTATCCGAGTAGCAAG-TACCATCAAACAAACT 416 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA-TACTTAGACAT 463 |||||||||||||| ||| ||| ||| |||||| || | ||| ||| |||||| |||| Sbjct 417 ATAACTGATTTAATAAGCTATTTGCATTTTCACAGTCTGAATTAGTTAATACTTACACAT 476 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||| ||||||| ||||||||| |||||| Sbjct 477 GCATGGCTTAATCTTTTAGACAAGAATATGACTATTGGCAG 517 >seq170638 Length=1027 Score = 170 bits (188), Expect = 6e-40 Identities = 226/320 (71%), Gaps = 48/320 (15%) Strand=Plus/Plus Query 25 AAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTT 84 || |||| | |||| ||||||||||||||||| |||||| | ||||| | |||||| Sbjct 737 AAGAGAGTCTGGTATTGTTATTTATTGTCACTACCACCCCGTACCAGGATTAGATAATTT 796 Query 85 GCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCG 144 ||||||||| ||||| | |||| ||| ||||||||||||||||| ||||||||| ||| | Sbjct 797 GCGCGCCTGTTGCCTCCATTGGGTGTCGTAGCCGTTTCTCAGGCCCCCTCTCCGAAATTG 856 Query 145 AACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGT 204 ||||||||||| |||| |||||| |||||||||||| Sbjct 857 AACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGC--------------------- 895 Query 205 TGATAGGGCAGAAATTTGAATGAACCATCGCCG-GCTCAAGGCCATGCGATTCGTTAAGT 263 |||||| | |||||| || ||||||| |||||| ||| ||| Sbjct 896 -----------------GAATGATGCGTCGCCGTGCACAAGGCCGTGCGATCCGTCGAGT 938 Query 264 TATTATGAATCACCAAGGAGCCCCG----AAG--GGCGTTGGTTTTTTATCTAATAAATA 317 || |||||||| || |||| || ||| |||||| ||||||||||||||| Sbjct 939 TACCATGAATCATCA--GAGCAACGGGCAAAGCCCGCGTTGACCTTTTATCTAATAAATG 996 Query 318 CACCCCTTCC-GAAGTCGGG 336 || ||||||| ||||||||| Sbjct 997 CAGCCCTTCCAGAAGTCGGG 1016 >seq124611 Length=1288 Score = 105 bits (116), Expect = 2e-20 Identities = 76/89 (85%), Gaps = 8/89 (9%) Strand=Plus/Plus Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAAT 475 |||||||||||||||||||||| || || | |||||||||||||||||||||| Sbjct 1 AATGAGCCATTCGCAGTTTCACAGT--------CTGAAACTTAGACATGCATGGCTTAAT 52 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||| |||||||| Sbjct 53 CTTTGAGACAAGCATATGATAACTGGCAG 81 >seq11221 Length=18262 Score = 89.7 bits (98), Expect = 2e-15 Identities = 67/77 (87%), Gaps = 4/77 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| | || |||| ||| || |||| |||||||||||||||||| Sbjct 16982 GTACTCATTCCAATTACCAAACTCAAA-GAGTCCAGTAT---TATTTATTGTCACTACCT 16927 Query 61 CCCCGTGTCGGGATTGG 77 ||||||||| ||||||| Sbjct 16926 CCCCGTGTCAGGATTGG 16910 >seq39179 Length=3005 Score = 82.4 bits (90), Expect = 2e-13 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 2997 ATACTTACACTTGGATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 2945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1505752197120