Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq171 609 7e-172
seq23443 181 3e-43
seq229483 170 6e-40
seq170638 170 6e-40
seq124611 105 2e-20
seq11221 89.7 2e-15
seq39179 82.4 2e-13
>seq171
Length=61800
Score = 609 bits (674), Expect = 7e-172
Identities = 448/513 (87%), Gaps = 13/513 (3%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| |||| ||||| |||| ||||||||||||||||||
Sbjct 56288 GTACTCATTCCAATTACCAGACTTAAAA-AGCCCGGTATTGTTATTTATTGTCACTACCT 56346
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56347 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 56406
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 56407 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 56466
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 56467 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCG 56526
Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GG 293
| |||||| |||||| ||| |||||| |||||||| || |||| || ||| |
Sbjct 56527 CAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAAAGCCCG 56584
Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352
||||| ||||||||||||||| || ||||||| ||||||||| | | ||| |||||
Sbjct 56585 CGTTGACCTTTTATCTAATAAATGCAGCCCTTCCAGAAGTCGGGCGATGTTGCACGTATT 56644
Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412
|||||||||||||| |||||||||| |||| |||||| |||||| |||| ||||||||
Sbjct 56645 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CAGGTACCATCAAACAAACTATAACTGA 56703
Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471
||||||||||||||||||||||||| || | ||| | | ||||||| ||||||||||||
Sbjct 56704 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 56763
Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||
Sbjct 56764 TAATCTTTGAGACAAGCATATGACTACTGGCAG 56796
>seq23443
Length=4826
Score = 181 bits (200), Expect = 3e-43
Identities = 215/287 (75%), Gaps = 7/287 (2%)
Strand=Plus/Plus
Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182
||||||| |||| ||| |||||||||||||||| |||| ||||| |||||||||||
Sbjct 4531 TCAGGCTTCCTCCCCGAAATCGAACCCTAATTCTCCGTCCCCCGTCACCACCATGGTAGG 4590
Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC- 241
|||||||||||||||||||||||| ||||||||||||||||||| || |||||| | |
Sbjct 4591 CCACTATCCTACCATCGAAAGTTGTCAGGGCAGAAATTTGAATGATCCGTCGCCGCCGCA 4650
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCA----CCAAGGAGCCCCGAAGGGCGTT 297
|||||| |||||| ||| | ||| |||||||| | || | | | |||||
Sbjct 4651 AAGGCCGTGCGATCCGTCGCGATATCATGAATCATCTGTCCAGCGGTCACAGCCCGCGTT 4710
Query 298 GGTTTTTTATCTAATAAAT-ACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCT 356
||||||| || || | ||||| ||| | ||||||| | | | || ||||||
Sbjct 4711 TACCTTTTATCGAAAAATTCCCACCCTTTCAGCAGTCGGGCGATGTTTCCCGTTTTAGCT 4770
Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403
|||| ||||| ||| |||||| ||| |||||| | ||| ||||
Sbjct 4771 CTAGTATTACTACGCTTATCCGAATAG-CAGGTACCAGCAACGAAAC 4816
>seq229483
Length=795
Score = 170 bits (188), Expect = 6e-40
Identities = 136/161 (84%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404
|| ||||||||||||||| ||| |||||||||| |||| ||| ||| |||||| ||||
Sbjct 358 CACGTATTAGCTCTAGAAATACTACGGTTATCCGAGTAGCAAG-TACCATCAAACAAACT 416
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA-TACTTAGACAT 463
|||||||||||||| ||| ||| ||| |||||| || | ||| ||| |||||| ||||
Sbjct 417 ATAACTGATTTAATAAGCTATTTGCATTTTCACAGTCTGAATTAGTTAATACTTACACAT 476
Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||| ||||||| ||||||||| ||||||
Sbjct 477 GCATGGCTTAATCTTTTAGACAAGAATATGACTATTGGCAG 517
>seq170638
Length=1027
Score = 170 bits (188), Expect = 6e-40
Identities = 226/320 (71%), Gaps = 48/320 (15%)
Strand=Plus/Plus
Query 25 AAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTT 84
|| |||| | |||| ||||||||||||||||| |||||| | ||||| | ||||||
Sbjct 737 AAGAGAGTCTGGTATTGTTATTTATTGTCACTACCACCCCGTACCAGGATTAGATAATTT 796
Query 85 GCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCG 144
||||||||| ||||| | |||| ||| ||||||||||||||||| ||||||||| ||| |
Sbjct 797 GCGCGCCTGTTGCCTCCATTGGGTGTCGTAGCCGTTTCTCAGGCCCCCTCTCCGAAATTG 856
Query 145 AACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGT 204
||||||||||| |||| |||||| ||||||||||||
Sbjct 857 AACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGC--------------------- 895
Query 205 TGATAGGGCAGAAATTTGAATGAACCATCGCCG-GCTCAAGGCCATGCGATTCGTTAAGT 263
|||||| | |||||| || ||||||| |||||| ||| |||
Sbjct 896 -----------------GAATGATGCGTCGCCGTGCACAAGGCCGTGCGATCCGTCGAGT 938
Query 264 TATTATGAATCACCAAGGAGCCCCG----AAG--GGCGTTGGTTTTTTATCTAATAAATA 317
|| |||||||| || |||| || ||| |||||| |||||||||||||||
Sbjct 939 TACCATGAATCATCA--GAGCAACGGGCAAAGCCCGCGTTGACCTTTTATCTAATAAATG 996
Query 318 CACCCCTTCC-GAAGTCGGG 336
|| ||||||| |||||||||
Sbjct 997 CAGCCCTTCCAGAAGTCGGG 1016
>seq124611
Length=1288
Score = 105 bits (116), Expect = 2e-20
Identities = 76/89 (85%), Gaps = 8/89 (9%)
Strand=Plus/Plus
Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAAT 475
|||||||||||||||||||||| || || | ||||||||||||||||||||||
Sbjct 1 AATGAGCCATTCGCAGTTTCACAGT--------CTGAAACTTAGACATGCATGGCTTAAT 52
Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||| ||||||||
Sbjct 53 CTTTGAGACAAGCATATGATAACTGGCAG 81
>seq11221
Length=18262
Score = 89.7 bits (98), Expect = 2e-15
Identities = 67/77 (87%), Gaps = 4/77 (5%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| | || |||| ||| || |||| ||||||||||||||||||
Sbjct 16982 GTACTCATTCCAATTACCAAACTCAAA-GAGTCCAGTAT---TATTTATTGTCACTACCT 16927
Query 61 CCCCGTGTCGGGATTGG 77
||||||||| |||||||
Sbjct 16926 CCCCGTGTCAGGATTGG 16910
>seq39179
Length=3005
Score = 82.4 bits (90), Expect = 2e-13
Identities = 50/53 (94%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 2997 ATACTTACACTTGGATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 2945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1505752197120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |