Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq33024 188 6e-43 >seq33024 Length=3557 Score = 188 bits (208), Expect = 6e-43 Identities = 555/848 (65%), Gaps = 27/848 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||||||||| || |||||||| |||||||| | || || |||||||| || || Sbjct 1864 ATGTACAAAAAAGCCGAAGCTTCTTTCTGGACTGCTGAAGAAGTCGATTTATCTTCCGAT 1805 Query 61156 ATGAATGACTGG---GAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212 | | ||||| || | | || || ||||| |||||||| | || ||| | Sbjct 1804 TTACGTCACTGGTCCGACACTCTGACGTCCGATGAACGTCATTTCATCACTCACGTGCTC 1745 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGC 61270 || ||||| ||||| || |||||||| || |||||| | ||| |||||| | Sbjct 1744 GCCTTCTTCGCCGCATCTGACGGTATTGTGCTGGAGAATCTCGCTTGT--CGTTTCATGA 1687 Query 61271 AGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATG 61330 |||| || ||| | | || ||| | || ||||| || || || || || || ||| Sbjct 1686 AGGAAGTTCAACTTCCTGAAGCGAGAGCATTTTACGGGTTTCAAATCGCTATCGAAAATA 1627 Query 61331 TCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTG 61390 |||| || || |||||| | | | || || ||||| | ||| || |||| Sbjct 1626 TCCATTCCGAAATGTACTCCTTATTATTGGAGACTTACATTAAGGATTCGGAGGAAAAAT 1567 Query 61391 AACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCT 61450 | || ||| ||| | ||||| || || || || ||||| || || |||||||||| Sbjct 1566 CGGGTTTATTCCGTGCTGTTGAGACTATCCCCGCTGTCAAGCGCAAGGCTGATTGGGCCT 1507 Query 61451 TCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGATTGCTGGCATTTGCGGT 61508 | |||||| || ||| | | || | ||| ||| | | || || || Sbjct 1506 TGCGCTGGATC-----GACGGCGGGGAGAGTTTCGCTGAGCGAATTGTCGCTTTCGCTTG 1452 Query 61509 GGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGG 61568 || || || |||| ||| |||| || ||| || |||||| | |||||||| || Sbjct 1451 TGTTGAAGGGATATTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGCTCAAGAAACGAGG 1392 Query 61569 ACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTG 61628 | | ||||| || || |||||| || |||||||| || || |||||||| | || || Sbjct 1391 ATTAATGCCGGGGCTTACCTTCTCGAACGAGTTGATTTCTCGAGACGAGGGGTTACACTG 1332 Query 61629 TGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 |||||| || |||| | | | |||| | || ||| || |||||||| || Sbjct 1331 TGATTTCGCCTGTTTGTTGT--ACTCGCTGT-TGAACAATAAGGCGAGTGAGGAGCGCGT 1275 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748 | | ||||||| |||||||| ||||| ||| ||| | |||||| |||| Sbjct 1274 GAAGGGGATTGTTTCAGAGGCGGTGGAAATCGAGAGGGAGTTTGTTTGTGACGCGCTGCC 1215 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 | | | | || |||||| | | ||||| |||||||||||||||||||| || Sbjct 1214 TTGCGCGTTGGTTGGGATGAATGGAGAGTTAATGAGTCAGTATATTGAATTTGTTGCTGA 1155 Query 61809 CCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAA-----AAACCCATTT 61863 | |||||| | ||| || || ||| | |||| | || || ||| Sbjct 1154 TAGGTTGTTGGGTGCTTTAGG---GATTGGGA--AAGTTTACGGAGTTTCGAATCCGTTT 1100 Query 61864 GATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGC 61923 |||| ||||| ||||||| || | || ||||| ||||||||||| || || || || Sbjct 1099 GATTGGATGGAATTGATTTCTTTGCAGGGAAAGACTAATTTTTTCGAAAAGCGGGTTGGG 1040 Query 61924 GACTATCA 61931 || ||||| Sbjct 1039 GAGTATCA 1032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396076985820800