Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1 639 2e-178 seq9259 87.8 2e-12 >seq1 Length=146306 Score = 639 bits (708), Expect = 2e-178 Identities = 739/993 (74%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 ||||| | ||| |||| ||| | |||||||| || |||| ||||| || || || Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTG 87926 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | ||| | |||||| |||| || || | |||||||| |||||||| Sbjct 87927 ATGATCCCTACATTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCC 87985 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 87986 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 88045 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 || || |||||||| || |||| |||| || || || | ||||| ||||| || Sbjct 88046 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 88105 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 |||||||| ||||| | || |||||| | || || |||||||||| | || | || Sbjct 88106 ATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 88165 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | |||||| | | || | | ||||||||||||||||||||||| || ||| Sbjct 88166 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 88225 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 ||| ||||||||||| ||||| ||||||||| || ||||| || || || ||| |||| Sbjct 88226 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGC 88285 Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 || ||| | ||||||| ||||||| || ||| || |||| ||||||||| || || Sbjct 88286 GGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 88345 Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341 ||||||||||| |||| ||| |||||||||| || || ||||| ||||||||||| || Sbjct 88346 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 88405 Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401 || |||||| | ||||| ||||| |||||||| || || || || |||||||||||| Sbjct 88406 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 88465 Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461 || |||| ||||||||| | |||| || || ||||||| ||| || || | || Sbjct 88466 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 88525 Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521 ||||| ||||||||||||||||| ||||| || ||||| || || ||||| || || || Sbjct 88526 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 88585 Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581 ||| || |||||||||||||| || || || || || ||| | ||||||||| | || Sbjct 88586 TCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGC 88645 Query 160582 TGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAA 160641 ||||||||| || || || || ||||| ||||| | ||| || || ||||| ||||| Sbjct 88646 TGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAA 88705 Query 160642 TCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACAC 160701 | ||||||||||| |||||||| || | | || | ||||| | || | || || Sbjct 88706 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 88765 Query 160702 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGC 160761 |||||| || | ||||||| ||| || || |||||||| ||||| || ||||| || Sbjct 88766 TTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 88825 Query 160762 TCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 160794 ||| ||||||||||| ||| | ||||||| ||| Sbjct 88826 TCATAACTTCCCTCTAGACTTAGCTGCTGTTGA 88858 Score = 576 bits (638), Expect = 2e-159 Identities = 732/997 (73%), Gaps = 9/997 (1%) Strand=Plus/Minus Query 161543 GAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTG 161602 |||| |||||||||||||| || |||||||| || | || ||||| ||||||| | | Sbjct 58123 GAGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTCG 58064 Query 161603 CTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCG 161662 || | || |||||| |||| || ||||| || | ||| |||||||||||||| | | Sbjct 58063 CTGTAGGGGGTTGGTTTACGGGTACGACGTTTGTAACGTCATGGTATACCCATGGGTTGG 58004 Query 161663 CTAGTTCCTATCTTGAGGG-TGCAAATTTTCTTA-CAGCGGCAGTTAGCACTCCAGCTGA 161720 | ||||||||| | || || ||||| ||||||| | || || ||| ||||| ||| | Sbjct 58003 CCAGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACCGCAGCCGTTTCTACTCCTGCTAA 57946 Query 161721 CGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCA 161779 | | | || ||| || || || || ||||||||||| || ||||| ||||| Sbjct 57945 TAGTTTAGCACACTCT-TTGTTGTTGCTGTGGGGTCCTGAAGCACAAGGAGATTTTACTC 57887 Query 161780 GGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGA 161839 | ||| ||| | || || || |||| |||||| || || || || ||||||| || | Sbjct 57886 GTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAA 57827 Query 161840 TTGGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAAT 161898 | || || ||| | || || || ||||||||||| ||| || | | || ||||| ||| Sbjct 57826 TAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAAT-TGCGCCCTTATAAT 57768 Query 161899 GCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTG 161958 || || || |||||||| || |||||||||||||| || || || || ||||| || Sbjct 57767 GCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTA 57708 Query 161959 GGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTA 162018 || ||||| |||||||| ||||| ||||| || || || || ||| | ||| | Sbjct 57707 GGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCCATATTCCGATTCATC 57648 Query 162019 CTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCA 162078 || || | ||||| || || ||||||||||| || || || || |||||||| || || Sbjct 57647 CTCTTTTTTCAAGGGTTTCATAATTGGACGCTGAACCCTTTTCATATGATGGGGGTTGCT 57588 Query 162079 GGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTC 162138 ||| | ||||| | ||| |||| | ||||||||| |||| || || ||||| || | Sbjct 57587 GGTGTATTGGGCGCCGCTCTGCTATGTGCTATTCATGGTGCTACCGTAGAAAATACTTTA 57528 Query 162139 TACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAG 162198 | |||||||||| |||||||| ||| ||||||| || | || |||| ||||| Sbjct 57527 TTTGAAGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACCCAAGCTGAGGAA 57468 Query 162199 ACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGT 162258 ||||| || ||||| || || |||||||| ||||| || ||||| || |||||||| Sbjct 57467 ACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCC 57408 Query 162259 AATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGT 162318 ||||| |||||||| |||||||||||| | || || || || | ||| | |||| ||| Sbjct 57407 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 57348 Query 162319 TCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAG 162378 || | || | | || || || | || || ||||| || ||||| || || ||||| Sbjct 57347 GCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAA 57288 Query 162379 ATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAAT 162438 || |||||||| || |||||||||||||| || ||||||||||| ||||| ||||| || Sbjct 57287 ATCCGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAAC 57228 Query 162439 GAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCT 162498 |||||| ||||||| ||| |||| | ||||| || ||||| ||| || |||||||| Sbjct 57227 GAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 57168 Query 162499 GAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 ||||| ||||| || | || ||||| || | ||||| Sbjct 57167 GAGGAGGTTCTACCCCGTGGAAACGCTCT-TTAATGG 57132 >seq9259 Length=9423 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 160943 TTACTTTCCCTTGTGAGGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTG 161002 |||| ||| ||| |||||| || || |||||| ||||| || | || ||| Sbjct 3842 TTACATTCGATTGCCCGGATGACGTGTACGTGCTTGACCAGGCTGAGGAGGAGGGAATTG 3901 Query 161003 ACGGACCCTACTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTG 161062 || ||| ||||| ||||| || || | |||||| | |||||||||||| | | | Sbjct 3902 ACCTACCATACTCGTGTCGGGCGGGGTCATGCTCTTCGTGTGCTGGTAAGGTGGTTGCCG 3961 Query 161063 GTACTGTAGATCAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTG 161122 ||| || || || || || || |||||| |||||||| || ||||| | || | | Sbjct 3962 GTAGCGTTGACCAGTCAGACCAGAGTTTCCTTGATGATGACCAGATTGAAGCTGGTTGGG 4021 Query 161123 TCCTGACCTGCGTTGCTTATCCCACTTCTGATGTAACTATT 161163 | ||||| || | ||||| || || ||||||| || ||| Sbjct 4022 TTCTGACTTGTGCCGCTTACCCGTCTGCTGATGTTACCATT 4062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549255132216000