Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq1 563 1e-155 >seq1 Length=146306 Score = 563 bits (624), Expect = 1e-155 Identities = 703/955 (74%), Gaps = 10/955 (1%) Strand=Plus/Plus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACC 188937 ||||| || || |||| ||||| ||||| ||||||||||||| | | ||||||| Sbjct 87894 AACCGCCTTTACATCGGGTGGTTTGGTGTTTTGATGATCCCTACATTATTGACTGCAACT 87953 Query 188938 ATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGA 188996 |||| || || | ||||| | ||||| || || ||||| |||||||| || || || Sbjct 87954 -TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 88012 Query 188997 ACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTC 189056 ||| || |||| || || | || |||||||| || || |||||||| || | ||| | Sbjct 88013 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 88072 Query 189057 ATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTG 189116 || || || || | ||||| || || || |||||||| || || | |||||||| Sbjct 88073 TTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCATCTGTTGATGAGTG 88132 Query 189117 GCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGC 189176 | | ||||| |||||||||| | || | || | |||||| | | || | || || Sbjct 88133 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 88189 Query 189177 CT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTG 189233 | | |||||||||||||||||||| || |||||| ||||||||||||||||| || Sbjct 88190 TTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TG 88248 Query 189234 C-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTG 189292 | |||| || || || || ||||| || || | || || || || |||| || | | Sbjct 88249 CTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCGGTTTTCTTGATCTACCCAATCG 88308 Query 189293 GTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGC 189352 ||||||| ||| ||||| | ||||| | || || ||| || ||||||| |||| Sbjct 88309 GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGA 88368 Query 189353 TTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAG 189412 |||| ||||| || |||||||||||||| |||||||| || |||||| |||| || || | Sbjct 88369 TTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTG 88428 Query 189413 GTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGG 189472 |||| ||||| || || || || || ||||||||||| | || || ||| || Sbjct 88429 GTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGA 88488 Query 189473 TTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAG 189532 | | |||||||| |||| || || || | ||||||| || || ||||| |||| Sbjct 88489 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAG 88548 Query 189533 AAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCAT 189592 |||| || || ||||| ||||||||||| ||||| ||||| | |||||||||||||| Sbjct 88549 AAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTAATCTTCCAATATGCTA 88608 Query 189593 CGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCT 189652 ||||| || || ||||| | ||||||||| | ||||| ||||| || || ||||| | Sbjct 88609 GTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTAGTAGGTATTT 88668 Query 189653 GGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATC 189712 ||||||| || | || | ||||| ||||| |||||| | ||||| ||||| ||||| | Sbjct 88669 GGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAACTTAAATGGTTTCAATTTCAACC 88728 Query 189713 AATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTG 189772 |||| | ||||| ||||||||||||| | || || ||||| || | | ||||||| Sbjct 88729 AATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTG 88788 Query 189773 CTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGA 189827 || |||||||||||||| |||||||| ||||| ||||| ||||||||||| || Sbjct 88789 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 88843 Score = 520 bits (576), Expect = 1e-142 Identities = 728/1016 (72%), Gaps = 4/1016 (0%) Strand=Plus/Minus Query 189986 GTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGG 190045 |||||| || | ||||||||| | |||| || || || ||||| ||||||||||| Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093 Query 190046 ATTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTT 190105 || | || ||||| ||||||| |||| | || || ||| |||| || |||||||| Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033 Query 190106 TGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTC 190164 || || ||||| ||||| || | || ||| || | || || ||| ||||| Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGC-AATTTCT 57974 Query 190165 TTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGG 190224 | || || || || || || |||||| || | | | || ||| | | | || |||| Sbjct 57973 TAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGG 57914 Query 190225 GTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTG 190284 |||||||| | ||||| ||||| | ||| ||| | || || || ||| |||||| Sbjct 57913 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTG 57854 Query 190285 TGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCAC 190344 | || || || || ||||||| ||||| || || ||| | || || || ||||| || | Sbjct 57853 TTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTC 57794 Query 190345 G-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTT 190403 | ||| || | | || ||||| ||||| || || |||||||| || || ||||||||| Sbjct 57793 GATCTGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTT 57735 Query 190404 GTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTC 190463 ||| || || || || || || || || || || |||||||||| ||||| || Sbjct 57734 GTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 57675 Query 190464 GGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTG 190523 ||||| ||||| || ||||| ||| ||||||| || || || || ||||| ||||||||| Sbjct 57674 GGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTG 57615 Query 190524 AACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATC 190583 ||||| || || |||||||| ||||| ||| | |||| | || || || | || || Sbjct 57614 AACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTATT 57555 Query 190584 CATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAA 190643 ||||||| || ||||| |||||||| | |||||||||||| ||||| || || Sbjct 57554 CATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCGG 57495 Query 190644 GCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGG 190703 || || || | || |||| || || || ||||| |||||||| || |||||||| ||| Sbjct 57494 GCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGG 57435 Query 190704 TCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTT 190763 || ||||||||||| ||||| || ||||| | ||||| |||||||||||| | ||| Sbjct 57434 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 57375 Query 190764 GTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTT 190823 || || || | ||| | |||| | | | || | | ||||| || | ||||| Sbjct 57374 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTA 57315 Query 190824 CGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACT 190883 ||||| |||||||| || ||||| || ||| | ||||| |||||||| || || |||||| Sbjct 57314 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGACT 57255 Query 190884 TTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGAT 190943 || ||||| |||||||| || || || |||||| ||||| | ||| |||| || ||| Sbjct 57254 TTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGAT 57195 Query 190944 CAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || || ||||| || || |||| || || || || | || | || |||||||| Sbjct 57194 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 57139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631641011280000