Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq1 666 0.0 >seq1 Length=146306 Score = 666 bits (738), Expect = 0.0 Identities = 731/967 (76%), Gaps = 4/967 (0%) Strand=Plus/Plus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 || || |||||| |||| ||||| ||||| |||||||||| || | ||| | ||||| Sbjct 87894 AACCGCCTTTACATCGGGTGGTTTGGTGTTTTGATGATCCCTACATTATTGACTGCAACT 87953 Query 160659 GTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717 |||| ||||||| || ||| |||||||||| || || || || || ||||| ||||| Sbjct 87954 -TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 88012 Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777 ||| ||| |||| || || | || |||||||| || || |||||||| || ||||| | Sbjct 88013 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 88072 Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837 ||| || || || | ||||| || || || |||||||| |||||| ||||||| || Sbjct 88073 TTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCATCTGTTGATGAGTG 88132 Query 160838 GCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTG 160897 | | ||||||||||||||||| | || | || | |||||| | | || | || Sbjct 88133 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 88192 Query 160898 CTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-G 160956 || |||||||| |||||||||||| | ||| || || ||||| || ||||| ||| | Sbjct 88193 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTG 88251 Query 160957 TTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTC 161016 |||||||||| || || ||||| || || | ||| || ||| | |||| || |||||| Sbjct 88252 TTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCGGTTTTCTTGATCTACCCAATCGGTC 88311 Query 161017 AAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTG 161076 |||| ||| |||||||||||||| || || || |||||||| |||||||||||| ||| Sbjct 88312 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTG 88371 Query 161077 TCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTG 161136 | |||||||| || ||||||||||| |||||||| || |||||||||||||| ||||||| Sbjct 88372 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTG 88431 Query 161137 TCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTC 161196 | ||||| || || || || || ||||||||||| |||| |||||| || | Sbjct 88432 TATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCA 88491 Query 161197 GTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGA 161256 | |||||||| || || || || || | ||||||| || |||||||| ||||| | Sbjct 88492 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 88551 Query 161257 CCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCT 161316 | || || ||||| |||||||||||||| || ||||| | ||||||||||| ||| | Sbjct 88552 CTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTT 88611 Query 161317 TCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 161376 |||| || || ||||| || ||||||||| | || || ||||| || || ||||| |||| Sbjct 88612 TCAATAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTAGTAGGTATTTGGT 88671 Query 161377 TCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGT 161436 | ||||| | ||| | ||| ||||| |||||| | || || ||||| |||||||| | Sbjct 88672 TTACTGCTTTAGGTATTAGCACTATGGCGTTCAACTTAAATGGTTTCAATTTCAACCAAT 88731 Query 161437 CCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTA 161496 | | | ||| |||| || || | || || |||||||| | | || ||||||| Sbjct 88732 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTA 88791 Query 161497 ACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTG 161556 |||||||||||||||| ||||| || ||||||||||| ||||||||||| || | |||| Sbjct 88792 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTG 88851 Query 161557 CTGCTGA 161563 ||| ||| Sbjct 88852 CTGTTGA 88858 Score = 526 bits (582), Expect = 2e-144 Identities = 732/1022 (72%), Gaps = 8/1022 (1%) Strand=Plus/Minus Query 163886 GTTCGATGTCCTGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGG 163945 ||| ||| | |||| |||||| | |||| || || || ||||| ||||||||||| Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093 Query 163946 ATTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTT 164005 || | || ||||| ||||||| | || | || || ||| |||| ||||| ||||| Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033 Query 164006 TGTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGTTACC--TTG--AGGGTGCTAATT 164061 ||| || ||||| ||||| || | || |||| | ||| ||| ||| |||| Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCC---AGTTCCTATTTGGAAGGCTGC-AATT 57977 Query 164062 TCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTT 164121 || | || || || || || || |||||| || | | | || ||| | | | || | Sbjct 57976 TCTTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGT 57917 Query 164122 GGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTT 164181 |||||||||| | || || || || | | | ||||| ||| | || || || ||| ||| Sbjct 57916 GGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTT 57857 Query 164182 TTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTG 164241 |||| || | || || |||||| || || ||||| ||| | || || || ||| ||| Sbjct 57856 TTGTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTG 57797 Query 164242 CACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCT 164301 | || ||| | || || || ||||| || || |||||||| || |||||||| | Sbjct 57796 CTCGATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTT 57737 Query 164302 TTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGT 164361 |||| || ||||| || || || || || || ||| ||||||||||||| || | Sbjct 57736 TTGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTT 57677 Query 164362 TTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACAC 164421 |||| || || || || ||| ||||| || | || | ||||| || ||||| ||||| | Sbjct 57676 TTGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGC 57617 Query 164422 TCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTA 164481 | ||||| || ||||||||||| ||||| || | | || | ||||| || ||||||| Sbjct 57616 TGAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTA 57557 Query 164482 TTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCA 164541 ||||||||||||||||||| |||||||| |||||||||||||| ||||||| ||| Sbjct 57556 TTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCC 57497 Query 164542 AGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCT 164601 ||| || | || || |||| || || ||||| || |||||||| || ||||| || | Sbjct 57496 GGGCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTT 57437 Query 164602 GGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCT 164661 |||| || || ||||| ||||||| |||||| |||||||| || ||||||||| | | Sbjct 57436 GGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 57377 Query 164662 TTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATC 164721 |||| || || | || | |||| ||| || |||| | ||||||| || | || | Sbjct 57376 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACC 57317 Query 164722 TTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGA 164781 | ||||| ||||| || || || ||||| || | ||||| || |||||||||||||||| Sbjct 57316 TACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGA 57257 Query 164782 CGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAG 164841 | ||||| || || || || ||| | || ||||| | ||||| |||||||| | || Sbjct 57256 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 57197 Query 164842 ACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCT 164901 | ||||| || ||| || |||| || ||||| ||||| || | || ||||| || | Sbjct 57196 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTT 57137 Query 164902 AA 164903 || Sbjct 57136 AA 57135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557176544848000