Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq200694 91.5 2e-13 seq89267 91.5 2e-13 seq27346 91.5 2e-13 >seq200694 Length=3324 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 162099 GAAAGTAGCACTTATTACTGGGATCACAGGGCAAGATGGATCTTACCTAGCTGAACTTCT 162158 ||| || ||||| || |||| ||||| || ||||| || ||||||||| |||| ||||| Sbjct 1175 GAAGGTTGCACTAATCGCTGGAATCACCGGCCAAGACGGCTCTTACCTAACTGAGCTTCT 1234 Query 162159 CCTTCAGAAAGGATATACAGTTCACGGTATTATCCGTCGTGCTTC 162203 || |||||||||||| ||| || || |||||||||| |||| Sbjct 1235 TCTCCAGAAAGGATATCAAGTCCATGGCCTTATCCGTCGATCTTC 1279 >seq89267 Length=11637 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 162099 GAAAGTAGCACTTATTACTGGGATCACAGGGCAAGATGGATCTTACCTAGCTGAACTTCT 162158 ||| || ||||| || |||| ||||| || ||||| || ||||||||| |||| ||||| Sbjct 10922 GAAGGTTGCACTAATCGCTGGAATCACCGGCCAAGACGGCTCTTACCTAACTGAGCTTCT 10981 Query 162159 CCTTCAGAAAGGATATACAGTTCACGGTATTATCCGTCGTGCTTC 162203 || |||||||||||| ||| || || |||||||||| |||| Sbjct 10982 TCTCCAGAAAGGATATCAAGTCCATGGCCTTATCCGTCGATCTTC 11026 >seq27346 Length=4931 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 162099 GAAAGTAGCACTTATTACTGGGATCACAGGGCAAGATGGATCTTACCTAGCTGAACTTCT 162158 ||| || ||||| || |||| ||||| || ||||| || ||||||||| |||| ||||| Sbjct 1361 GAAGGTTGCACTAATCGCTGGAATCACCGGCCAAGACGGCTCTTACCTAACTGAGCTTCT 1420 Query 162159 CCTTCAGAAAGGATATACAGTTCACGGTATTATCCGTCGTGCTTC 162203 || |||||||||||| ||| || || |||||||||| |||| Sbjct 1421 TCTCCAGAAAGGATATCAAGTCCATGGCCTTATCCGTCGATCTTC 1465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689224274217000