Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq21279 307 2e-81 seq20604 80.6 4e-13 >seq21279 Length=97452 Score = 307 bits (340), Expect = 2e-81 Identities = 225/256 (88%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| || |||| ||||||||||||||| ||| ||| |||||||||||||||| | Sbjct 6875 GTACAAAGGACATGGACATAGTCAACGCGAGCT-GATAACTTGCGCTTACTAGGAATT-C 6932 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 6933 CTCGTTAAAGACCAACAATTGCAATGATCTATCCCTATCACAATGAAATTTCAAAGATTA 6992 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | | | ||| |||||||||||| | |||| |||||||||| |||||||||||| || || Sbjct 6993 CACAGGCCTATCGGCCAAGGTGTGA-ACTCATTGAATACATAAGTGTAGCGCGCATGTGG 7051 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 || |||||||||||||||||||||||| |||||||||||||||||||| | |||||| | Sbjct 7052 CCTAGAACATCTAAGGGCATCACAGACTTGTTATTGCCTCAAACTTCCTTTACCTAAATG 7111 Query 241 GCCAT-CTCCCTCGAA 255 || || |||||| || Sbjct 7112 GCTATATTCCCTCTAA 7127 >seq20604 Length=16792 Score = 80.6 bits (88), Expect = 4e-13 Identities = 99/132 (75%), Gaps = 4/132 (3%) Strand=Plus/Plus Query 95 CCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTG 154 |||||| || ||||||||||||| | | || || || || | || | | | || | Sbjct 10779 CCATCATAATAAAATTTCAAAGATCATCTAGATCTATCAAACATGATGTGAAATT-GTCG 10837 Query 155 AATACATCAGTGTAG--CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212 ||||||||||||||| | | | | |||| || ||||||||| ||||||||| |||| | Sbjct 10838 AATACATCAGTGTAGCACACACCTTCGGCACATAACATCTAA-GGCATCACATACCTATC 10896 Query 213 ATTGCCTCAAAC 224 ||| |||||||| Sbjct 10897 ATTACCTCAAAC 10908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751844414255