Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq17426 156 2e-35 seq10623 134 6e-29 seq20150 111 7e-22 >seq17426 Length=4653 Score = 156 bits (172), Expect = 2e-35 Identities = 150/191 (79%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 493 GGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 552 ||||||| ||| ||||||||| ||| || | |||| | | || || || |||| Sbjct 4018 GGTGGGATCCCTCATGGGTGCACCGCCGAGTGACCTTGATCTTCTGAGAAGGGTTCGAGT 4077 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 |||||| ||||||||||||||| | ||||||||||||||||| |||| |||||||| Sbjct 4078 GTGAGCATGCCTGTTGGGACCCGAAGG-TGGTGAACTATGCCTGAGCAGGGCGAAGCCAG 4136 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 ||||||||||||| |||| |||| | | ||| ||||||||||| ||||| | ||| | Sbjct 4137 AGGAAACTCTGGTTAAGGCGTGCAGTGATACTGACGTGCAAATCGTTCGTCTGACTTGTG 4196 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 4197 TATAGGGGCGA 4207 >seq10623 Length=574 Score = 134 bits (148), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||| ||||| |||||||||||||||||||||||| | ||||||| ||||| | Sbjct 216 CGACCCATCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCGAGTCAAAGGGTGAGTA 157 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | | || ||| ||| || | || ||| ||||||||| |||| Sbjct 156 AACCCGTAAGGCACAAGGAAGCTGATTGGCAG---GATCCCTCACGGGTGCACCGCCGAC 100 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 || | |||| | | || || || ||| |||||| ||| ||||||||||||||| Sbjct 99 TGACCTTGATCTTCTGAGAAGGGTTCAAGTGTGAGCATGCATGTCGGGACCCGAAAGATG 40 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTC 621 ||||||||||||||| ||| ||||||||||||||||| Sbjct 39 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTC 1 Score = 100 bits (110), Expect = 1e-18 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 72 GGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAG 131 ||| |||||||| | || || ||||||||| ||| |||||||||||| | ||||||| Sbjct 567 GGGCGGTAAATTCCGTCCAAGGCTAAATATGGGCAAGAGACCGATAGTGAACAAGTACCT 508 Query 132 TGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAA 191 || |||||||| ||| || ||| ||||||||| ||| || | ||||||||| | | Sbjct 507 CGAGGTAAAGATGATAAGGACCTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGA 448 Query 192 GGGAAGCG 199 ||||| || Sbjct 447 GGGAAACG 440 >seq20150 Length=52862 Score = 111 bits (122), Expect = 7e-22 Identities = 108/135 (80%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| |||||||||||||||||| || ||| ||| |||||||| | || | ||||| Sbjct 25522 GAGTCGGGTTGTTTGGGAATGCAGC-CTCAATCGGGCGGTAAATTCCGTCCAG-GCTAAG 25579 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || || |||||||||||||| ||||||| | || | |||||||||| |||||| | Sbjct 25580 TAAGGGTGAGAGACCGATAGCGAACAAGTACCGCGAGGTATAGATGAAAAGGACTTTGAA 25639 Query 159 AAGAGAGTTAAAAAG 173 |||||||| ||| || Sbjct 25640 AAGAGAGTCAAAGAG 25654 Score = 96.9 bits (106), Expect = 1e-17 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || || || |||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 26432 GAAGGGTTCGAGTGTGAGCATGCCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGC 26491 Query 600 AGGGTGAAGCCAGAGGAAACT 620 |||| |||||||||||| ||| Sbjct 26492 AGGGCGAAGCCAGAGGATACT 26512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079541892350