Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq12991 120 9e-25 seq19402 96.9 1e-17 seq21279 75.2 3e-11 >seq12991 Length=975 Score = 120 bits (132), Expect = 9e-25 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305 || |||| || || || | |||||||||||| || ||||||||||||| ||| ||||| Sbjct 973 TTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGT 914 Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAG 364 ||| ||||||||||||||||| ||||| |||||||||||||||||| | |||||| Sbjct 913 CAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAG 855 >seq19402 Length=197664 Score = 96.9 bits (106), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 10/136 (7%) Strand=Plus/Plus Query 51 GGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCT 110 |||||||||||| ||||||||||| |||| |||||||||||||||||| |||||||| | Sbjct 50087 GGTGGAGCATGTAGTTTAATTCGATGCAAAGCGAAGAACCTTACCAAAGCTTGACATGCA 50146 Query 111 CTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGG 170 | | |||||| || ||| | ||| ||| ||| | ||| || ||||||| Sbjct 50147 ATAAATCCTCTA-AG-----GGT---GCATTC-GGGAACACGGACACATGTAGTGCATGG 50196 Query 171 TTGTCGTCAGCTCGTG 186 ||||||||||||||| Sbjct 50197 CTGTCGTCAGCTCGTG 50212 Score = 77.0 bits (84), Expect = 1e-11 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 375 CCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCG 434 |||||||| ||| || || ||| | || ||||||||||||| | |||||||||| Sbjct 50032 CCGCGAGGGTGAGCTAACTTCAAAAATTCGTCTTCAGTTCGGATTGCAAGCTGCAACTCG 49973 Query 435 ACTATATGAAGCTGGAATCGCTAGTAATCG 464 || ||||||| ||||||||||||||||| Sbjct 49972 CCTGCATGAAGCCGGAATCGCTAGTAATCG 49943 >seq21279 Length=97452 Score = 75.2 bits (82), Expect = 3e-11 Identities = 79/102 (77%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGGT 65 |||||| ||||||| |||||||||||||| || | | ||| || ||||||||||||| Sbjct 7387 GCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGAAGTGGAGCATGTGGC 7329 Query 66 TTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||| || ||| || ||| ||||||| || ||||| Sbjct 7328 TTAATTTGACTTAACACGGGGAAACTTACCAGGTCCAGACAT 7287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503678790720