Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq18961 75.2 2e-11 seq18042 75.2 2e-11 >seq18961 Length=252912 Score = 75.2 bits (82), Expect = 2e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 130 CCCACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGG 189 || ||||||||||| ||||| || || | || ||||||||||| ||||| |||||| Sbjct 195886 CCAACTCGCTTCATTCGTTTCTTTCCTTCTTTCTGCTTCTCAAGAAGCTTCTTCTTACGA 195945 Query 190 CTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCT 230 | | ||| || || || ||||| || || || |||||||| Sbjct 195946 GTGATGTCTCCTCCATAACATTTCGCAAGAACATTCTTTCT 195986 Score = 75.2 bits (82), Expect = 2e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 130 CCCACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGG 189 || ||||||||||| ||||| || || | || ||||||||||| ||||| |||||| Sbjct 214490 CCAACTCGCTTCATTCGTTTCTTTCCTTCTTTCTGCTTCTCAAGAAGCTTCTTCTTACGA 214549 Query 190 CTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCT 230 | | ||| || || || ||||| || || || |||||||| Sbjct 214550 GTGATGTCTCCTCCATAACATTTCGCAAGAACATTCTTTCT 214590 >seq18042 Length=9044 Score = 75.2 bits (82), Expect = 2e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 130 CCCACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGG 189 || ||||||||||| ||||| || || | || ||||||||||| ||||| |||||| Sbjct 3768 CCAACTCGCTTCATTCGTTTCTTTCCTTCTTTCTGCTTCTCAAGAAGCTTCTTCTTACGA 3709 Query 190 CTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCT 230 | | ||| || || || ||||| || || || |||||||| Sbjct 3708 GTGATGTCTCCTCCATAACATTTCGCAAGAACATTCTTTCT 3668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838220942912