Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq21279 242 7e-62 >seq21279 Length=97452 Score = 242 bits (268), Expect = 7e-62 Identities = 214/263 (81%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||||| |||||||||||| ||| | | | || | |||||||||||||||||||| || Sbjct 7136 GCCGGTTTCTTAGAGGGAATATAGCCATTTAGGTAAAGGAAGTTTGAGGCAATAACAAGT 7077 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||||||||||||||| |||| || |||||||||||| | | ||| ||||| Sbjct 7076 CTGTGATGCCCTTAGATGTTCTAGGCCACATGCGCGCTACACTTATGTATTCAATGAGTT 7017 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||||| ||| ||| |||||||| | ||| | | ||| | |||||||| Sbjct 7016 CA-CACCTTGGCCGATAGGCCTGTGTAATCTT-TGAAATTTCATTGTGATAGGGATAGAT 6959 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| |||| |||||||||| |||||||||||| || |||||| ||||| Sbjct 6958 CATTGCAATTGTTGGTCTTTAACGAGGAATTCCTAGTAAGCGCAAGTTATCAGCTCGCGT 6899 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| || |||| || |||||||| Sbjct 6898 TGACTATGTCCATGTCCTTTGTA 6876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946997706496