Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq11975 320 5e-85 seq18586 316 7e-84 seq7195 123 8e-26 >seq11975 Length=774 Score = 320 bits (354), Expect = 5e-85 Identities = 264/312 (85%), Gaps = 11/312 (4%) Strand=Plus/Minus Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 769 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATTA 710 Query 128 GCCCGC-GAAG-GA-CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCAT 183 ||||| |||| || |||| | ||| || | || | || || | |||| |||| Sbjct 709 ACCCGCCGAAGCGAGCCTTGAGACCAAAAGAAGGG-GTTGTTACCCCGCCTCCGATTCAC 651 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC-GAAACGGCTCCCA 242 || ||||||||| ||| | | ||||||||||||||||||| || |||| ||||||| Sbjct 650 AGAGTAAGTAAAATAACAAAA---GTAGTGGTATTTCACTTGCCCCCGAAA--GCTCCCA 596 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 |||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 595 CTTAGACTACACCTCTCAAGTCATTTCACAAAGTTGGACTAAAGTCAAGCTCAACAGGGT 536 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| Sbjct 535 CTTCTTTCCCCGCTGATTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 476 Query 363 GATAGGGACAGT 374 || |||||| || Sbjct 475 GACAGGGACTGT 464 Score = 134 bits (148), Expect = 5e-29 Identities = 82/87 (94%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508 ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 465 GTTACTCCCGCCGTTTACCCGCGCTTGGTAGAATTTCTTTACTTTGACATTCAGAGCACT 406 Query 509 GGGCAGAAATCACATTGCGTCAACATC 535 | |||||||||||||||||| | |||| Sbjct 405 GTGCAGAAATCACATTGCGTTAGCATC 379 >seq18586 Length=36132 Score = 316 bits (350), Expect = 7e-84 Identities = 213/237 (90%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 |||||||||||||||||||||| |||||||||||||||||||||||||||| || |||| Sbjct 25301 GGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTTGCAGGATA 25242 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||| | ||| |||||||| |||||||||||| |||| ||||||||||||||||||| Sbjct 25241 GTAGACATGGAAAGTGGGAACCTCGTTAATCCACTCATCCGCGTCACTAATTAGATGATA 25182 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 ||||||||| | ||||||| |||||||||||||||||| ||||||||| |||||||||| Sbjct 25181 AGGCATTTGACAACCTTAACAGAGTCATAGTTACTCCCTACGTTTACCCTCGCTTGGTTG 25122 Query 480 AA-TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 || |||| |||||||||||||||||||||||||||| ||||||||| ||| | |||| Sbjct 25121 AATTTTCGTCACTTTGACATTCAGAGCACTGGGCAGTAATCACATTACGTTAGCATC 25065 >seq7195 Length=270 Score = 123 bits (136), Expect = 8e-26 Identities = 76/81 (94%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 435 |||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||| Sbjct 148 GGAATCTCGTTAGTCCATCCATGCGCGTCACTAATTAGACGACGAGGAATTTGGCTACCT 207 Query 436 TAAGAGAGTCATAGTTACTCC 456 ||||||||| ||||||||||| Sbjct 208 TAAGAGAGTTATAGTTACTCC 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634850770336