Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq19012 358 2e-96 seq21279 352 9e-95 >seq19012 Length=155696 Score = 358 bits (396), Expect = 2e-96 Identities = 321/401 (80%), Gaps = 29/401 (7%) Strand=Plus/Plus Query 107 ATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCG 166 || |||||||||||||||||||||||||||||||||||||||||| |||| || ||||| Sbjct 71599 ATATGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTATTTCCATGTCACCCG 71658 Query 167 TTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71659 TTACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 71718 Query 227 AACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC 285 | ||||| || | |||| ||||| | ||| ||||||| |||||||| || ||| Sbjct 71719 ATGTGTCGCCAGCACTAAGGACATGCATTCCGTCAAGTTATCATGAATCATCA--GAG-- 71774 Query 286 CCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAG 344 | | |||| | || | ||| || |||||||||||| | | Sbjct 71775 -CAACGGGC--------------------AAACCCGCCTCCCAAAAGTCGGGGTTTGTTG 71813 Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 || |||| |||||||||||||| |||||||||| ||| | || ||| |||||| |||| Sbjct 71814 CACGTATAAGCTCTAGAATTACTACGGTTATCCGAGTAAT-AGTTACCATCAAACAAACT 71872 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACAT 463 ||||||| |||||||||||||||||||||||| || | | ||| | ||||||| | || Sbjct 71873 ATAACTGTTTTAATGAGCCATTCGCAGTTTCATAGTCTGAATTTGTTCATACTTACAAAT 71932 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||||||||||||||||||||| Sbjct 71933 GCAGGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 71973 >seq21279 Length=97452 Score = 352 bits (390), Expect = 9e-95 Identities = 315/387 (81%), Gaps = 16/387 (4%) Strand=Plus/Plus Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||| ||||| |||||||||||||||||| | || ||| ||| |||||||||| Sbjct 22033 TCAGGCTCTCTCTCTGGAATCGAACCCTAATTCTCTGTCACCTGTTACCACCATGGTAGA 22092 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC- 241 |||||||||||| |||||||||||||||||||||||||||||||| | ||||| || | Sbjct 22093 CCACTATCCTACAATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACT 22152 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC-CCCGAA-GGGCGTTG 298 ||||||||||||| ||| |||||| |||||||| || || | | |||| |||| | Sbjct 22153 AAGGCCATGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCGAACCTGCGTCG 22212 Query 299 GTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTC 357 ||||||||||||||| || |||| || |||| || ||| | ||| |||||||||| Sbjct 22213 ACCTTTTATCTAATAAATGCATCCCTCCCACAAGTTGGAGTTAGTTGCACGTATTAGCTC 22272 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 ||||||||| |||||||||| ||||| || ||| |||||| |||| ||||||||||||| Sbjct 22273 TAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGATTTAA 22331 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||||||||| |||||| | || | ||||||| ||||||||| |||||||| Sbjct 22332 TGAGCCATTCGTAGTTTC--------GCATGTTCATACTTACACATGCATGACTTAATCT 22383 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||| ||||||||||||| |||||| Sbjct 22384 TTGAG--AAGCATATGACTATTGGCAG 22408 Score = 147 bits (162), Expect = 7e-33 Identities = 111/130 (85%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||| |||| |||||| |||| | |||| | | ||| |||||||||||||||||| Sbjct 14569 GTACTTATTCTAATTACCAGACTCGAAAG--CACGATATTGCTATTTATTGTCACTACCT 14626 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 14627 CCCCGTGTTAGGATTGTGTAATTTGCGCGCCTGCTACCTTCCTTGGATGTGGTAGCCGTT 14686 Query 121 TCTCAGGCTC 130 ||| | |||| Sbjct 14687 TCTTAAGCTC 14696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510077423872