Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq20199 183 2e-41 >seq20199 Length=1256174 Score = 183 bits (202), Expect = 2e-41 Identities = 555/845 (66%), Gaps = 22/845 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| || |||||||||| || || |||||| | || ||||| Sbjct 343957 ATGTACAAGAAAGCCGAAGCATCTTTCTGGACGGCTGAAGAAGTCGATCTATCTCAAGAC 343898 Query 61156 ATGAATGACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||||| | | | ||| ||| || || ||||| ||||| || | || Sbjct 343897 GGTCGCGACTGGGAGAATCTCAACGA-CGGAGAGAGGCACTTCATCAAACACGTCCTCGC 343839 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| ||||| |||||| | ||| ||| | || Sbjct 343838 TTTCTTCGCCGCATCTGACGGAATCGTTCTCGAGAATCTCGCTTCACGGTTCATGTCCGA 343779 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 |||||||| || || |||||| ||||||||| |||||||| || || |||||| |||| Sbjct 343778 TGTGCAAGTCTCTGAAGCGCGTGCTTTCTACGGGTTCCAGATCGCGATTGAGAATATCCA 343719 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 |||||||||||||||| | ||| |||| || ||||||| || || | || | Sbjct 343718 CTCGGAGATGTACAGTCTCCTCCTCGACACTTACATCAAAGACAACAAAGAGAGAGACCA 343659 Query 61395 ATTGTTCAATGCCATCGAGACGATAC----CGGCGGTGAAGCGGAAAGCGGATTGGGCCT 61450 | || |||||||| || || | || || | || ||||| | |||||| Sbjct 343658 TCTCTTTCGGGCCATCGAAACAATCCCTTGCGTCGCTAAA----AAAGCCCAATGGGCCA 343603 Query 61451 TCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGG 61510 | || ||||| | | | | || || | ||| || | | || || || | Sbjct 343602 TGAAGTGGAT---CGATGGATCTCAGACTTTCGCTGAGAGAATCGTCGCCTTCGCTTGCG 343546 Query 61511 TCGAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 |||| ||| | || ||| || | | | || | ||||||| ||| | |||||||| || Sbjct 343545 TCGAAGGTATCTTCTTCTCAGGCAGCTTCTG-CTCAATCTTCTGGCTCAAGAAACGAGGT 343487 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 || ||||| || |||| ||| ||| |||||||| ||||| ||||| ||| | || || Sbjct 343486 CTCATGCCTGGGTTGACTTTCTCCAACGAGTTGATCTCACGAGACGAAGGCTTACACTGC 343427 Query 61630 GATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 ||||| | ||| | ||| | ||||| | || || | ||||||||||| || Sbjct 343426 GATTTCGCCTGCCT---TATCTACACGCTCT-TGAGGACGAAGCTCTCGGAGGAGCGCGT 343371 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748 | |||||| |||| ||||| ||||| ||| ||| || ||||| | || Sbjct 343370 GAAGTCGATTGTATGTGACGCGGTTGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCC 343311 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 | | | | || ||||| ||| | ||| |||||||| || ||||| || || Sbjct 343310 TTGCGCGTTGGTTGGGATGAACCGTGAGTTGATGAGTCAGTATATCGAGTTTGTGGCGGA 343251 Query 61809 CCGTCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867 | || || ||| ||||||| | || | || | | || || ||||||| Sbjct 343250 TAGGCTTTTGGGTGCGCTTGGGTACGGTAAGG-TGTACGGTGTGGTGAATCCGTTTGATT 343192 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927 ||||| | || ||||| | || || || || || || ||||| | || ||||| | Sbjct 343191 GGATGGAGTTAATCTCGCTTCAGGGGAAAACAAACTTCTTTGAGAAGAGAGTTGGCGATT 343132 Query 61928 ATCAA 61932 | ||| Sbjct 343131 ACCAA 343127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397464517646480