Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq17269 569 3e-157 seq20510 551 7e-152 seq19338 385 6e-102 seq19441 91.5 2e-13 >seq17269 Length=4150 Score = 569 bits (630), Expect = 3e-157 Identities = 713/970 (74%), Gaps = 10/970 (1%) Strand=Plus/Plus Query 188872 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-C 188930 ||| | || ||||| || | || ||||| ||||| ||||||||||||| ||| | | | Sbjct 2763 ACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGAC 2821 Query 188931 TGCAACCATCTGCTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCAT 188990 ||||| | || || |||| || | ||||| || || ||||| |||||||| || Sbjct 2822 CGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 2881 Query 188991 CCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGT 189050 || ||||| || |||| || || | || |||||||| || || || ||||| || | Sbjct 2882 TCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTAT 2941 Query 189051 CCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGA 189110 ||| | || || |||||| | || || ||||| ||||||||||| || || | || Sbjct 2942 TCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGA 3001 Query 189111 TGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCAT 189170 ||| ||||| ||||| |||||||||| |||| | || | ||||| | | || | Sbjct 3002 TGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGG--T 3059 Query 189171 CTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTG 189227 || || | | |||||||||||||||||||| || |||||| |||||||||||||| Sbjct 3060 GTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTG 3118 Query 189228 GATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATC 189286 ||| ||| |||| || || || ||||||||||| || | || || || || |||| | Sbjct 3119 GAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACC 3177 Query 189287 CTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACT 189346 | |||||||||| ||| ||||| | ||||| | || ||| ||| || ||||||| Sbjct 3178 CAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACT 3237 Query 189347 ACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAG 189406 ||| |||| ||||| || ||||||||||| || |||||||| || |||||| | || | Sbjct 3238 TTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTG 3297 Query 189407 TCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTT 189466 | || ||||| ||||| || || || || || ||||| ||||| | || || ||| Sbjct 3298 TAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGGTTCCTTGGTAACTTCTA 3357 Query 189467 CACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAG 189526 || | | |||||||| |||| || || || | ||||||| || || |||| Sbjct 3358 GTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAG 3417 Query 189527 AAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAAT 189586 |||||||||| |||||||| || |||||||| || ||||| || || | |||||||||| Sbjct 3418 AAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAAT 3477 Query 189587 ATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGG 189646 |||| |||||||| || ||||| | || |||||| | || || ||||| || || | Sbjct 3478 ATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAG 3537 Query 189647 GTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACT 189706 |||| |||||||| || | || | || || ||||| |||||||| ||||| ||||| | Sbjct 3538 GTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATT 3597 Query 189707 TCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCA 189766 |||| ||||| | ||||| ||||||| |||||| | || || ||||| || || | | Sbjct 3598 TCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTA 3657 Query 189767 ACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTG 189826 |||||||| |||||||||||||| |||||||| ||||| |||||||||||||| || | Sbjct 3658 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTAG 3717 Query 189827 ATCTGGCAGC 189836 | || || || Sbjct 3718 ACCTAGCTGC 3727 >seq20510 Length=252746 Score = 551 bits (610), Expect = 7e-152 Identities = 732/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | | || ||||| || ||||| ||||||||||| Sbjct 62277 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 62336 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||| ||| |||| | || || ||| | || || || || ||| Sbjct 62337 CTATTGCTCTTTCCGTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 62396 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTT 190166 | || ||||| || || ||| | || ||| || | || ||| |||||| | Sbjct 62397 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 62456 Query 190167 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 190226 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 62457 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 62516 Query 190227 CCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 190286 |||||| | ||||| ||||| | ||| ||| | || || || ||||||||||| Sbjct 62517 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 62576 Query 190287 GCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG- 190345 || |||||||| |||||||| |||| || || ||| | ||||| |||||||| || || Sbjct 62577 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 62636 Query 190346 TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 190405 ||| || | | || ||||| ||||| || || ||||||||||| || ||||||||||| Sbjct 62637 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 62695 Query 190406 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGG 190465 | |||||||| || || || || |||||||| |||||||||| ||||| || || Sbjct 62696 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 62755 Query 190466 TGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAA 190525 ||| || || || || || ||| ||||||| || || || || ||||| ||||| |||| Sbjct 62756 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAA 62815 Query 190526 CCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCA 190585 ||| || || |||||||| || || ||| | ||||| | || || || | || || || Sbjct 62816 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 62875 Query 190586 TGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGC 190645 ||||| |||||||| |||||||| | |||||||||||| ||||| || || || Sbjct 62876 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 62935 Query 190646 ATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTC 190705 || || | || |||| ||||| || ||||| |||||||| || ||||| || ||||| Sbjct 62936 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 62995 Query 190706 TCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 190765 ||||||||||| ||||| || ||||| | ||||| |||||||||||| | ||||| Sbjct 62996 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 63055 Query 190766 TCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 190825 || || | ||| | |||| | | | || | | ||||| ||| | ||||| || Sbjct 63056 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 63115 Query 190826 TGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTT 190885 ||| |||||||| || ||||| || ||| | ||||| |||||||| || || |||||||| Sbjct 63116 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 63175 Query 190886 TTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCA 190945 || || |||||||| ||||| || |||||| |||| | ||| |||| || ||||| Sbjct 63176 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 63235 Query 190946 ACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || ||||| || || |||| || || || || | ||| | || |||||||| Sbjct 63236 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 63289 Score = 159 bits (176), Expect = 4e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 189646 GGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAAC 189705 ||||| |||||||| || | || | || || ||||| |||||||| ||||| ||||| Sbjct 30762 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAAT 30703 Query 189706 TTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTC 189765 ||||| ||||| | ||||| ||||||| |||||| | || || ||||| || || | Sbjct 30702 TTCAACCAATCAGTCGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATT 30643 Query 189766 AACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTT 189825 ||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| || Sbjct 30642 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTA 30583 Query 189826 GATCTGGCAGC 189836 || || || || Sbjct 30582 GACCTAGCTGC 30572 >seq19338 Length=76300 Score = 385 bits (426), Expect = 6e-102 Identities = 601/853 (70%), Gaps = 5/853 (1%) Strand=Plus/Plus Query 190149 GAGGGTGCTAATTTTCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCT 190208 || ||| | |||||| | || || || || | || |||||| || | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 190209 CTTCTTCTACTTTGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGG 190268 | | |||| |||||||||||| | ||||| ||||| | ||| ||| | || Sbjct 38377 TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGC 38436 Query 190269 GGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTC-ATGCTTCG 190327 || | || | || ||| || ||||||| |||||||| |||| || || ||| | || Sbjct 38437 GGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACG 38496 Query 190328 TCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTG 190386 ||| |||||||| || || || || | | || ||||| ||||| || || ||||||| Sbjct 38497 TCAATTTGAACTTGCTCGATCCGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTG 38555 Query 190387 GTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGT 190446 |||| || |||||||||||| ||||||| || || || || |||||||| |||||| Sbjct 38556 GTCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGT 38615 Query 190447 TCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCT 190506 |||| ||||| || ||||| || || | || || ||| ||||||| || || || | Sbjct 38616 TCTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAGGGT 38675 Query 190507 TCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAG 190566 | ||||| ||||| ||||||| || || |||||||| || || ||| | |||| | | Sbjct 38676 TTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGCGG 38735 Query 190567 CACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAAC 190626 | || || | || || ||||||| |||||| | |||||||| | | |||||||||| Sbjct 38736 CTCTGCTATGCGCTATTCATGGTGCTACTGTA-AAAATACTTTATTTAAAGATGGTGATG 38794 Query 190627 AAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCA 190686 ||||| || || | || || | || |||| ||||| || ||||| ||||||| Sbjct 38795 GTGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGTCA 38854 Query 190687 CTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGC 190746 | || |||| || ||||| ||||||||||| | ||| || |||||| | |||| | Sbjct 38855 CCGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTAAC 38914 Query 190747 ATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTG 190806 ||| ||||||| | ||||| || || ||| | | || | | | || | | | Sbjct 38915 ATTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGTCG 38974 Query 190807 GTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAG 190866 |||| ||| | ||||| | | | |||||||| || ||||| || || | ||||| |||| Sbjct 38975 GTCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGAAG 39034 Query 190867 ATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCAT 190926 |||| || || |||||||| || || ||||||| ||||| || |||||| |||| | | Sbjct 39035 ATCCGGAATTTGAGACTTTCTATAC-TAAAATATTCTTTTAAACGAAGGTATTCGCGCTT 39093 Query 190927 GGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAA 190986 || | || || ||||| || ||||| || || |||| || || || || | ||| Sbjct 39094 GGATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCAC 39153 Query 190987 GAGGCAACGCTCT 190999 | | |||||||| Sbjct 39154 GTGAAAACGCTCT 39166 >seq19441 Length=80586 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 190374 ATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGT 190433 || || |||||||||| || |||||||||||| |||||||| || || || || ||| Sbjct 18201 ATCGCATTCTCTGGTCTAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGT 18260 Query 190434 CAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTC 190493 ||||| |||||||||| |||| || ||||| || | || || || || ||||| Sbjct 18261 CAATCTGGTTGGTTCTTTGCGCGTAGTTTTGGTGTAGCGACTATATTTCGTATCATCCTC 18320 Query 190494 TTCTTGCAGGGCTTCCATAA 190513 || || || || || ||||| Sbjct 18321 TTTTTCCAAGGGTTTCATAA 18340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633910724418000