Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq17269 690 0.0 seq20510 533 2e-146 seq19338 392 4e-104 >seq17269 Length=4150 Score = 690 bits (764), Expect = 0.0 Identities = 751/994 (76%), Gaps = 2/994 (0%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 ||||| | ||| ||||| || | |||||||||||| | || ||||| ||||| || Sbjct 2742 TTCTGTAACTGGATAACTAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 2801 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTTGCTGCTCCC 160691 |||||||| || | ||| | ||||| | ||||||| || ||| |||||||||| Sbjct 2802 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 2861 Query 160692 CCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAAC 160751 || || || || || ||||| |||||||| ||| |||| || || | || |||||||| Sbjct 2862 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 2921 Query 160752 ATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATT 160811 || || || ||||| || ||||| |||| || |||||| | || || ||||| || Sbjct 2922 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 2981 Query 160812 TGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTA 160871 |||||||||||||| ||||||||||||| ||||||||||||||||| |||| | || Sbjct 2982 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAATGGTGGTCCTTATGAACTAATTGTT 3041 Query 160872 TTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGC 160931 | ||||| | | || | || || |||||||| |||||||||||| | ||| Sbjct 3042 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3101 Query 160932 CTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGC 160990 || || ||||| || ||||| ||| ||||||||||| || |||||||| ||||| | ||| Sbjct 3102 CTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 3160 Query 160991 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTAT 161050 || ||| | |||| || | |||||||| ||| |||||||||||||| || || || Sbjct 3161 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 3220 Query 161051 CTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCC 161110 ||||||||| |||||||| ||| |||| |||||||| || |||||||| || |||||||| Sbjct 3221 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 3280 Query 161111 CTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGG 161170 || |||||||| ||||| |||||||| ||||| || || || || || ||||| || Sbjct 3281 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCACGG 3340 Query 161171 TTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGG 161230 ||| |||| |||||| || | | |||||||| || || || || || | || Sbjct 3341 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 3400 Query 161231 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGG 161290 ||||| || |||||||||||||| || |||||||| || |||||||| ||||| || || Sbjct 3401 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 3460 Query 161291 TCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGC 161350 || ||||||||||||| ||| |||||||| || ||||| || || |||||| | || Sbjct 3461 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 3520 Query 161351 AGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAA 161410 || ||||| || || ||||| ||||| ||||| | ||| | || ||||| ||||| Sbjct 3521 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 3580 Query 161411 CCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACAC 161470 ||| || || ||||| |||||||| || | | ||| |||| || || | || || Sbjct 3581 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 3640 Query 161471 CTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGC 161530 |||||||| || | || ||||||||||||||||||||||| ||||| || |||||||| Sbjct 3641 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 3700 Query 161531 TCACAACTTCCCTCTGGATCTCGCTGCTGCTGAG 161564 |||||||||||| || || || ||||||| |||| Sbjct 3701 TCACAACTTCCCGCTAGACCTAGCTGCTGTTGAG 3734 >seq20510 Length=252746 Score = 533 bits (590), Expect = 2e-146 Identities = 713/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || ||||| || ||||| ||||||||||| || | || ||||| ||| ||| | || Sbjct 62307 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCGTGTGCCTATTTCGCT 62366 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| | || |||||||| ||||| || ||||| || || || | || Sbjct 62367 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGC- 62425 Query 164037 TCTAGTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGAT 164093 ||||| | | || ||| ||||| | || || || || || || |||||| || Sbjct 62426 --TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAT 62483 Query 164094 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGG 164153 | | | |||||| | | |||| ||||||||||| | || || || || | | | Sbjct 62484 AGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 62543 Query 164154 TGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATC 164213 ||||| ||| | || || || ||||||||||| || ||||||| ||||||| | || Sbjct 62544 TGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATA 62603 Query 164214 GGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCT 164273 ||||| ||| | || || |||||| |||| || ||| | || || || ||||| Sbjct 62604 GGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCA 62663 Query 164274 ATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGG 164333 || || ||||||||||| |||||||| ||||| || || || || || || || || Sbjct 62664 ATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGT 62723 Query 164334 CAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTG 164393 |||||| ||||||||||||| || ||||| || ||||| || || ||||| || | Sbjct 62724 CAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTC 62783 Query 164394 TTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGC 164453 || ||||||| || ||||| |||||| | ||||| || ||||||||||| || || || Sbjct 62784 TTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGT 62843 Query 164454 ATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTT 164513 | || || | ||||| || || ||||||||||||||||| ||||| |||||||| ||| Sbjct 62844 GTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTT 62903 Query 164514 GAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACT 164573 ||||||||||| ||||||| ||| || || | || ||||||| ||||| ||| Sbjct 62904 GAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACT 62963 Query 164574 TACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAAT 164633 || || |||||||| || |||||||| ||||| || || ||||| ||||||| |||| Sbjct 62964 TATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAAT 63023 Query 164634 AAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCT 164693 || |||||||| || ||||||||| | ||||| || || | || | |||| ||| || Sbjct 63024 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCT 63083 Query 164694 ATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATT 164753 |||| | ||||||| || | || || ||||| ||||| || || || ||||| || Sbjct 63084 CTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATC 63143 Query 164754 AGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAA 164813 | ||||| || ||||| ||||||||||| |||||||| || || || || | || ||| Sbjct 63144 CGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAA 63203 Query 164814 GGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAG 164873 || | || || |||||||| | ||| ||||| || ||| || |||| || ||| Sbjct 63204 GGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 63263 Query 164874 GAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || ||||| || | || ||||| || ||| Sbjct 63264 GAGGTTCTACCACGTGGAAACGCTCTTTAA 63293 Score = 154 bits (170), Expect = 2e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 161367 GGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAAC 161426 ||||| ||||| ||||| | ||| | || ||||| |||||||| || || ||||| Sbjct 30762 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAAT 30703 Query 161427 TTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTG 161486 |||||||| || || | ||| |||| || || | || || |||||||| || | Sbjct 30702 TTCAACCAATCAGTCGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATT 30643 Query 161487 AATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTG 161546 || ||||||||||||||||||||||| ||||| || |||||||||||||||||||| || Sbjct 30642 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCGCTA 30583 Query 161547 GATCTCGCTGCTGCTGAG 161564 || || ||||||| |||| Sbjct 30582 GACCTAGCTGCTGTTGAG 30565 >seq19338 Length=76300 Score = 392 bits (434), Expect = 4e-104 Identities = 603/856 (70%), Gaps = 3/856 (0%) Strand=Plus/Plus Query 164049 GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCT 164108 || ||| | ||||| | || || || || | || |||||| || | | | |||||| Sbjct 38317 GAAGGTTCCAATTTTTTAACTGCTGCAGTTTTTACTCCTGCTAATATTTTAGCGCATTCT 38376 Query 164109 CTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGG 164168 | | |||| ||||||||||| | || || || || | | | ||||| ||| | || Sbjct 38377 TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGC 38436 Query 164169 GGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTC-ATGCTTCG 164227 || | || | || ||| || ||||||| ||||||| | || ||||| ||| | || Sbjct 38437 GGTATGTGCGATTATGTTGCTGTCCACGGTGCTTTCGCATTAATAGGTTTTTATGTTACG 38496 Query 164228 GCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGG 164287 || |||||| |||| || || | || || || ||||| || || |||||||| Sbjct 38497 TCAATTTGAACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGG 38556 Query 164288 TCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTT 164347 ||| |||||||| ||||| | || || ||||| || || || |||||| ||||||| Sbjct 38557 TCCAATTGCTGTTTTTGTTTCTTTCTTTCTAATGTATCCACTAGGTCAATCTGGTTGGTT 38616 Query 164348 CTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTT 164407 |||||| || ||||| || ||||| | || ||||| || | || ||||||| || Sbjct 38617 CTTTGCGCCTAGTTTTGGTGTAGCGGCTTTATTTCGATTCATCCTCTTTTTCCAAGGGTT 38676 Query 164408 CCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGC 164467 ||||| |||||| | ||||| || ||||||||||| || || || | || | | || Sbjct 38677 TCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGACGCGGC 38736 Query 164468 TCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACA 164527 ||| || || ||||||||||||||||| ||| | |||||||| ||| |||||||||| Sbjct 38737 TCTGCTATGCGCTATTCATGGTGCTACTGTAAA-AATACTTTATTTAAAGATGGTGATGG 38795 Query 164528 ATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCAC 164587 ||||||| ||| | || | || ||||||| ||||| ||||| || |||||||| Sbjct 38796 TGCAAATACATTCCGTACTTTTAACCCAACTCAAGCAGAAGAAACTTATTCAATGGTCAC 38855 Query 164588 TGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCA 164647 || |||| ||| ||||| || || ||||| |||||| ||||||| |||||| || Sbjct 38856 CGCTAACCACTTTTGGTCACAAATCTTTGGGGCTGCTTTTTCCAATAAGTGTTGGTAACA 38915 Query 164648 CTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGG 164707 | ||||||| | ||||| || || || | | || ||| || |||| | |||| Sbjct 38916 TTCCTTTATGTTATTTGTACCGGTACCAGGTTTATTGATGAGTGCTCTTGGAGTAGTCGG 38975 Query 164708 TCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGA 164767 ||| || | || || | | | ||||| || || || ||||| ||| | ||||| || || Sbjct 38976 TCTAGCTTTGAACCTACATCCCTATGACTTCGTTTCCCAGGAAATTCGTGCAGCGGAAGA 39035 Query 164768 TCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTG 164827 ||| ||||||||||| |||||||| || || || || | || ||||| | || || || Sbjct 39036 TCCGGAATTTGAGACTTTCTATACTAA-AATATTCTTTTAAACGAAGGTATTCGCGCTTG 39094 Query 164828 GATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAG 164887 ||| || | ||| ||||| || ||| || |||| || ||||| ||||| || | Sbjct 39095 GATTGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACG 39154 Query 164888 AGGTAACGCACTCTAA 164903 | ||||| || ||| Sbjct 39155 TGAAAACGCTCTTTAA 39170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559178680398800