Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20americanum_20[genbank_20GCA_5F900188915.1_202017-07-22] 837 sequences; 9,013,692 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq83 223 8e-56 seq433 212 1e-52 >seq83 Length=41462 Score = 223 bits (246), Expect = 8e-56 Identities = 301/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 26237 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 26178 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 26177 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 26118 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||||| | || | ||| ||||| | || | | Sbjct 26117 ACATTCTCGCTTCCGCTTCG--TCCACCAC-CGCTCGCGCGGAGGCTTCTCT-CTAAGGC 26062 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | | ||| | ||||||||||||| ||| |||| | Sbjct 26061 GGAACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 26006 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 26005 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 25947 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 25946 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 25887 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 25886 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 25838 >seq433 Length=22214 Score = 212 bits (234), Expect = 1e-52 Identities = 301/410 (73%), Gaps = 20/410 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 7973 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 8032 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 8033 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 8092 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||||| | || | ||| ||||| | || | | Sbjct 8093 ACATTCTCGCTTCCGCTTCG--TCCACCAC-CGCTCGCGCGGAGGCTTCTCT-CTAAGGC 8148 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | |||||||| |||| | | ||| | ||||||||||||| ||| |||| | Sbjct 8149 GGAACGCTCCC-TACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 8203 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 8204 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 8262 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 8263 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 8322 Query 352 AGTC-ACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || | || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 8323 AGGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 8372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177590143488